Gene Information

Name : Odosp_3555 (Odosp_3555)
Accession : YP_004254686.1
Strain : Odoribacter splanchnicus DSM 220712
Genome accession: NC_015160
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 4228481 - 4229767 bp
Length : 1287 bp
Strand : +
Note : COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR001732: IPR014026: IPR014027: IPR017476; KEGG: fjo:Fjoh_0356 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose

DNA sequence :
ATGGAAGAGATTAAAATCGGAGTCGTCGGATTAGGGTATGTAGGACTTCCTTTAGCCCGTCTCTTTGCGACAAAATATGC
TGTAGTCGGGTTCGATCTGAAAAAAGAACGTATCGAAGCCTTGAACCGAGGGATAGACAGGACACTGGAAGTGTCGGAAG
AAGTGATGAAATCGGTATTGCGCCCCTCCGTTCCCAAACGGGGAGAGAAGGGGTTGTATTGTTCCTGTGACCCGGAAGAT
CTGAGAGATTGCAATTATTATATCATTACCGTGCCCACTCCTGTCGATAAACATAACAGGCCCGATCTCACTCCGTTGAT
CAGGGCTAGTGAGACAGTCGGTCAGGTGATTGTTCGCGGAGATATTGTCATTTATGAATCGACGGTTTATCCCGGGGCTA
CCGAAGAAGACTGTATCCCTGTGATAGAGCGGGTTTCAGGATTAAAATACAATGTAGATTTCTTTGCCGGTTATTCCCCC
GAAAGAATCAATCCGGGAGATAAACAACATACGGTAGAAAAAATTAAAAAGGTAACTTCGGGTTCTACTCCCGGGGTGGC
AGAGAAAGTGAACGCGCTCTATCATTCGGTTATCGTGGCGGGCACCCATCTGGCTCCTTCTATCAGAGTGGCCGAGGCAG
CCAAGGTAATAGAAAATTCACAGCGGGATATCAATATCGCCTTTGTCAACGAATTGTCGAAAATCTTCAATTTAATGCAT
ATCGATACACAAGCTGTGCTCGAAGCTGCCGCTACGAAGTGGAATTTTTTATCCTTCCGGCCCGGCTTGGTCGGAGGACA
TTGTATCGGTGTGGATCCCTATTATTTGGCCCAGAAAGCTCAGGAATACGGATACCATCCGGAAATTATTCTGGCAGGAC
GCAGACTGAACGACAGTATGGGCGAGTATGTGGCCAAACAAACGTTGAAGTGTATGATCCGGAAAGGACAATGTATCAAG
GGATCTAAAGTTTTGGTGCTGGGGATTACTTTTAAAGAAAATTGTCCCGATGTCAGAAATACCAAAGTGGTCGATATTAT
CGCTGCTTTGAAAGAATTTGACTTGGAAGTCGATGTTTACGATCCCTGGGCATCTCCCGAGGAAGTACGGAAAGTCTACG
GTTTAGAAATGAAGAATACCCTCCCCGCCGAAAAATACGAGGCGGTGGTATTGGCTGTTGCTCATCAGGTATTCCGGTCT
TTGCAATTGAGGGAGTTGTGTAAAGAAAACGGTATTGTTTATGATGTGAAAAGTGTTGCCGGAGAGGCTGTAGAAGGACG
GTTGTAA

Protein sequence :
MEEIKIGVVGLGYVGLPLARLFATKYAVVGFDLKKERIEALNRGIDRTLEVSEEVMKSVLRPSVPKRGEKGLYCSCDPED
LRDCNYYIITVPTPVDKHNRPDLTPLIRASETVGQVIVRGDIVIYESTVYPGATEEDCIPVIERVSGLKYNVDFFAGYSP
ERINPGDKQHTVEKIKKVTSGSTPGVAEKVNALYHSVIVAGTHLAPSIRVAEAAKVIENSQRDINIAFVNELSKIFNLMH
IDTQAVLEAAATKWNFLSFRPGLVGGHCIGVDPYYLAQKAQEYGYHPEIILAGRRLNDSMGEYVAKQTLKCMIRKGQCIK
GSKVLVLGITFKENCPDVRNTKVVDIIAALKEFDLEVDVYDPWASPEEVRKVYGLEMKNTLPAEKYEAVVLAVAHQVFRS
LQLRELCKENGIVYDVKSVAGEAVEGRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-107 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-107 55
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-100 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Odosp_3555 YP_004254686.1 nucleotide sugar dehydrogenase VFG0431 Protein 8e-108 55