Gene Information

Name : Odosp_3554 (Odosp_3554)
Accession : YP_004254685.1
Strain : Odoribacter splanchnicus DSM 220712
Genome accession: NC_015160
Putative virulence/resistance : Virulence
Product : UDP-glucose 4-epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 5.1.3.2
Position : 4227501 - 4228481 bp
Length : 981 bp
Strand : +
Note : COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pdi:BDI_0026 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: Nucleoside-diphosphate-sugar epimerase; P

DNA sequence : 
ATGAGAAAATTTTTAGTAACAGGAGGAGCCGGTTTTATCGGTTCGAATCTGTGTGAATATCTTTTGAAAGCAGGGGAGGA
AGTGACTTGTCTGGATAATTTTGCTACAGGTAAATTTGAAAATATAGAAGCTTTATTGAGGGAATATCCGGAGCGATTTA
AATTGCAGGTGGGGGATATCCGCAAACCGGAAGATTGCCGCAAAGCAGTGGCTGAGGCGGAATATGTATTTCATGAGGCG
GCTTTGGGCTCCGTACCGCGGTCGATCAATGACCCGCAGACCACCAATGAAGTGAATATTTCGGGTTTCCTGAATATGTT
GGTCGCTGCCCGGGATGCCGGAGTCAGACGTTTTGTATATGCCGCCAGTTCTTCTACTTATGGCGATTCTCAGAATTTGC
CCAAAGTGGAAGAGGTGATCGGGCGCCCTTTATCGCCTTATGCCATCACCAAATATGTGAACGAGCTTTATGCCGATGTG
TTCGGACGGGTATATGGGATGGAATGTATCGGTTTACGTTACTTCAACGTATTCGGACGCCGGCAATCGCCGGACGGTGC
TTATGCTGCCGTTATCCCGAAATTCGTGGAACAACTGATGCGGTATGAATCTCCGGTCATTAACGGAGACGGTGAATATT
CCCGCGATTTCACCTATATCGACAATGTCTTACAGATGAACTGGCTGGCGATGAATACGGAGAATCCGAAGGCTGTAAAT
ACGGTATACAATACCGCTTATGGGGAGAATACCACGCTGAATCAATTGGTCGGTTATCTCAAAGAGTTGTTGGGCTTTTA
CGACGCCCGGATTGCTGACGTGGATATTGTTTACGGCCCTGTCCGGAAAGGAGATATTCCGCATTCTCTGGCCTCTATCG
ATAAAGCCCGGCAGTTGTTGGGATACGATCCCCGGTTTAATATGAAACAGGGATTGAGGGAAGCGGTCAAATGGTATTGG
GAGAATTTAAAAAGAAAGTGA

Protein sequence : 
MRKFLVTGGAGFIGSNLCEYLLKAGEEVTCLDNFATGKFENIEALLREYPERFKLQVGDIRKPEDCRKAVAEAEYVFHEA
ALGSVPRSINDPQTTNEVNISGFLNMLVAARDAGVRRFVYAASSSTYGDSQNLPKVEEVIGRPLSPYAITKYVNELYADV
FGRVYGMECIGLRYFNVFGRRQSPDGAYAAVIPKFVEQLMRYESPVINGDGEYSRDFTYIDNVLQMNWLAMNTENPKAVN
TVYNTAYGENTTLNQLVGYLKELLGFYDARIADVDIVYGPVRKGDIPHSLASIDKARQLLGYDPRFNMKQGLREAVKWYW
ENLKRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 4e-73 54
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 4e-73 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Odosp_3554 YP_004254685.1 UDP-glucose 4-epimerase VFG0430 Protein 2e-73 54