Gene Information

Name : Odosp_2083 (Odosp_2083)
Accession : YP_004253267.1
Strain : Odoribacter splanchnicus DSM 220712
Genome accession: NC_015160
Putative virulence/resistance : Unknown
Product : Pyridoxal biosynthesis lyase pdxS
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 2484299 - 2485168 bp
Length : 870 bp
Strand : -
Note : COGs: COG0214 Pyridoxine biosynthesis enzyme; HAMAP: Vitamin B6 biosynthesis protein; InterPro IPR001852; KEGG: clj:CLJU_c39580 pyridoxal biosynthesis protein PdxS; PFAM: Vitamin B6 biosynthesis protein; SPTR: Pyridoxal biosynthesis lyase pdxS; TIGRFAM: V

DNA sequence : 
ATGGGAAAATATGAATTAAACAAAAACCTTGCACAGATGTTGAAAGGTGGAGTGATCATGGATGTGACTAATGCAGAGCA
GGCAAAAATTGCTGAGGCAGCAGGAGCTTGTGCCGTAATGGCATTAGAGAGAGTACCGGCAGATATCCGTCGTGACGGTG
GAGTTGCCCGGATGTCCGATCCGCAGATGATCAAAGCCATTCAGAAAGCTGTTTCTATTCCGGTGATGGCCAAAGTGAGA
ATCGGTCATTTTGTGGAAGCTCAGATATTGGAAGCCATCGGTATCGACTTTATCGATGAAAGTGAAGTATTGACGCCTGC
CGACGAACTTTATCATGTAGATAAAACAGCCTTCAAAGTGCCGTTCGTATGTGGAGCACGTAATTTGGGTGAAGCTTTAC
GGCGTATCGGTGAAGGGGCTGCTATGATTCGTACCAAGGGAGAAGCTGGAACCGGAAATGTCGTTGAAGCGGTGACTCAT
ATGCGCCAGATCAACGATGATATGCGGCGGGTGAAAAATGCCGGAATGGAAGAATTGATGAGTCTGGCAAAAGAATTCGG
AGCTCCTTATGAATTAGTGAAATATGTACACGAAAATGGGAAATTACCTGTCGTGAATTTTGCTGCCGGTGGTATCGCCA
CTCCTGCCGACGCTGCCTTGATGATGCAGTTGGGCTCCGAAGGGGTATTCGTAGGTTCCGGAATCTTCAAATCCGGTGAT
CCGGCAAAACGGGCAAGAGCTATTGTTCAGGCTGTTACCTATTATAACGATCCGGTGAAATTGGCAGAACTGTCGGAAAA
CCTCGGAGAGGCTATGTCAGGACTCGAGATTAAAACATTGGAGAATAAATATGCTGAGAGAGGTTGGTAA

Protein sequence : 
MGKYELNKNLAQMLKGGVIMDVTNAEQAKIAEAAGACAVMALERVPADIRRDGGVARMSDPQMIKAIQKAVSIPVMAKVR
IGHFVEAQILEAIGIDFIDESEVLTPADELYHVDKTAFKVPFVCGARNLGEALRRIGEGAAMIRTKGEAGTGNVVEAVTH
MRQINDDMRRVKNAGMEELMSLAKEFGAPYELVKYVHENGKLPVVNFAAGGIATPADAALMMQLGSEGVFVGSGIFKSGD
PAKRARAIVQAVTYYNDPVKLAELSENLGEAMSGLEIKTLENKYAERGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 2e-76 67
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 2e-76 67
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 2e-76 67