Gene Information

Name : SpiBuddy_0073 (SpiBuddy_0073)
Accession : YP_004246112.1
Strain : Sphaerochaeta globosa Buddy
Genome accession: NC_015152
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 88334 - 89626 bp
Length : 1293 bp
Strand : -
Note : KEGG: afn:Acfer_2015 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit

DNA sequence : 
ATGTTGTATTTTATTCTTACCATAGGACTTATCATCCTTCTAGCCATGGGAATTCCCGTTGGATTCTCTCTGATGTTAAC
AGGTGCAATCGGGTACATGGTCAACATTGGGGACATTGGTGCATGGATGGAGATGACCATTCTTCCCATGCGAATGTCGT
ATAGCCTTCAGAACTTTCTTTTGCTTTCAATTCCCCTCTTCATCCTTGCTGCAAAATTGATGAATGGTTCAAGCATCACG
GAAAAGCTGTTTGGTTTTGCAAATACGTGTGTCGGCTGGCTTCCCGGAGGTCTTGGACATGCTAATATTTTTGCCAGTCT
CCTCTTTGCAGGTATGTCAGGAACCGCTGTCTCCGATGCTGCAGGCCTTGGTCAAATTGAGATTGCTGCAATGACAAAGA
ATGGATATGAACCGGACTTCAGCGCCGCTGTCACCGCCGCATCCTCGACCATTGGCCCCATTTTCCCTCCGAGCGTACCC
ATGGTCATGTTCTCAACCGTAAGCGGCGTTTCGGTAGGGAAATTGTTTCTTGGCGGTGTAGTTCCGGGAATCCTGTTAAC
CCTGGTACTTATGGTCATGGTGTATTTCTATGCAAAAAAACGTGGCTATCCCAGAGAAAAGTTTCCAACCGCATCCATTT
TCTGGAAAAGCTTCAAGGGAGCAATTCTTCCTCTTCTCACCCCGATTATCCTTCTTGCAGGTATCTGGAGTGGAACGTTC
ACGGCAACCGAGGCGGCTGCAATAGCTGCTCTGTATGCCCTCATTGTCAGCGTTTTCATTTTCAAGGAAATGACATGGAA
ACTATTTGTCCAGATTCTCAAGGAAACTGCACGTGATACTGCCTCGATCGGTTTGGTTACTTCAGCTGCAGCATTCTATG
GCTGGGTGTTGGCACGCTCGGGACTGACGGCAGTATTTGCTGATTGGATTTTGGGAGTTACCACCAATCCCATCCTGTTC
ATGCTTATCATCAACGTTTTCTTTCTTGTTATTGGTTGTTTTCTTGAATCAATTGCAGCCATCACGATTTTTGGTCCGGT
AATGCTGGCCCCTGCCCTCCAACTAGGCATTGATCCCTTGTATTTCGGCGTTGTTATGGTCTTCAACTTGATGATTGGCT
TAATCACCCCTCCCTTCGGGATTGTATTGTTTATCACTGCAGACCAGGCAAAGATCGACTTCAACCGAATGGTCAAGGCA
ACTTCACCATTCCTTATCCCCCTTTTGGGAACCCTTATTCTGATGTCCATAATACCTGGAATTATTACGTGGCTTCCCAA
TCTTTTGATGTGA

Protein sequence : 
MLYFILTIGLIILLAMGIPVGFSLMLTGAIGYMVNIGDIGAWMEMTILPMRMSYSLQNFLLLSIPLFILAAKLMNGSSIT
EKLFGFANTCVGWLPGGLGHANIFASLLFAGMSGTAVSDAAGLGQIEIAAMTKNGYEPDFSAAVTAASSTIGPIFPPSVP
MVMFSTVSGVSVGKLFLGGVVPGILLTLVLMVMVYFYAKKRGYPREKFPTASIFWKSFKGAILPLLTPIILLAGIWSGTF
TATEAAAIAALYALIVSVFIFKEMTWKLFVQILKETARDTASIGLVTSAAAFYGWVLARSGLTAVFADWILGVTTNPILF
MLIINVFFLVIGCFLESIAAITIFGPVMLAPALQLGIDPLYFGVVMVFNLMIGLITPPFGIVLFITADQAKIDFNRMVKA
TSPFLIPLLGTLILMSIIPGIITWLPNLLM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 1e-61 43
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 1e-61 43
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 8e-62 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SpiBuddy_0073 YP_004246112.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 4e-62 43