Gene Information

Name : SpiBuddy_0056 (SpiBuddy_0056)
Accession : YP_004246095.1
Strain : Sphaerochaeta globosa Buddy
Genome accession: NC_015152
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 64570 - 65856 bp
Length : 1287 bp
Strand : +
Note : KEGG: csa:Csal_0756 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit

DNA sequence : 
ATGAGCGGTTCCTTGGTGATTATTCTTTTTCTCTTTCTGCTTGCCACCGGACTTCCCATCGCCGTAAGCATGGGCATTCC
CTCGGCTCTCTATCTGATGATGGCAAACATCCCGCCCAGCCAGCTGATCCAGCGCATGGTTACCAGTCTCAACTCCTTTC
CAATGCTTGCCGTTCCCTTGTTCATCCTTGCCGCCGGCATGATGAACAGCTCGGGGATCACCGAGCGTCTGTTTGAATTT
GCCAAGCTGTTGGTCGGTAGGATGAAGGGAGGCTTGGCCCAGGTCAACATTGTCGCCTCCTTGATCTTCAGCGGCATCAG
CGGTGCGGCCCTGGCCGACGTAGGCGGGCTTGGAAACATCGAGATCGAGGCGATGGACAAGCAGAACTATCCCCGCACCC
ACTCAGCGGCCATTACGGCAGCCTCTGCAGTAATCGGTCCGATCTTCCCTCCTTCCATCCCTCTTATCATCTATGGAGCA
GCCGCCGAAACCTCCTCGATGCGCCTGCTGATCGCCGGGGTTCTTCCCGCCCTGGTCATTGCCATGGCATTGATGATACA
GGTAGCTATCTTCGCCCGCAAATTCAATTACCCCCGTGGTGTGGACCGTAAATTTTCTTTCTCTGAGATCAAAGCAATCA
CCAAGCGCGGCCTTCCCTCCATGTTGATGCCTGTCATCATGATGGGCGGCATGCTTTCAGGCTGGTTCAGTCCGACCGAG
GTTGCTGCCATTGCAGTGGCTTACGCCATCGTGCTGAGCCTGGCTTACAAAGAGCTGACGTTTGCTTCGTTTATCAATAA
CTGTATTGAAACACTGCGATCGACGGCGAGCGTCTTGTTCATCGTCGCCTCGGCAGCCATATTCGCCTGGGTTCTCACCG
TAGAGCAGATGCCTCAGCAGGTTTCGGCGCTCATGCTCAGCATCTCTGACAATCCGATCATCCTGCTCATGCTCGCCAAT
GTGATTCTCCTGATCGCCGGCATGTTTCTTGAGTCAACCGCAGCCATCATGATTCTGACTCCGATTCTCCTGCCTCCTTT
GGTGGCTGCAGGGGTGGATCCGGTCCACTTCGGGCTGGTCATGGTCTTCAACCTGATGATTGGTATGATCACCCCGCCGG
TGGGTATGAGCGTATATATGCTCAGCCCCATCGTAGGACTGCCGGTAGGAAAGGTATTTAGAGCATGCTTGCCGTATCTG
GCCTCCCTGTTGTGCGCCTTGGTGATTCTTACCTATGTCCCACAGATTTCTCTGTGGCTTCCCAATCTTGTATTCGCTTC
GAGGTAA

Protein sequence : 
MSGSLVIILFLFLLATGLPIAVSMGIPSALYLMMANIPPSQLIQRMVTSLNSFPMLAVPLFILAAGMMNSSGITERLFEF
AKLLVGRMKGGLAQVNIVASLIFSGISGAALADVGGLGNIEIEAMDKQNYPRTHSAAITAASAVIGPIFPPSIPLIIYGA
AAETSSMRLLIAGVLPALVIAMALMIQVAIFARKFNYPRGVDRKFSFSEIKAITKRGLPSMLMPVIMMGGMLSGWFSPTE
VAAIAVAYAIVLSLAYKELTFASFINNCIETLRSTASVLFIVASAAIFAWVLTVEQMPQQVSALMLSISDNPIILLMLAN
VILLIAGMFLESTAAIMILTPILLPPLVAAGVDPVHFGLVMVFNLMIGMITPPVGMSVYMLSPIVGLPVGKVFRACLPYL
ASLLCALVILTYVPQISLWLPNLVFASR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 5e-61 42
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 5e-61 42
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 4e-61 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SpiBuddy_0056 YP_004246095.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-61 42