Gene Information

Name : SpiBuddy_0264 (SpiBuddy_0264)
Accession : YP_004246296.1
Strain : Sphaerochaeta globosa Buddy
Genome accession: NC_015152
Putative virulence/resistance : Virulence
Product : dTDP-glucose 4,6-dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 4.2.1.46
Position : 290596 - 291576 bp
Length : 981 bp
Strand : +
Note : KEGG: bpb:bpr_I2537 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase

DNA sequence : 
ATGGGGTATGAGCATCTGGTATTTCCAAAAGATTCAGTATTCTTGGTAACTGGAGGGGCTGGATTCATAGGGTCCAATCT
CTGTGAAGCTATTCTTCGAATGGGGTATATCGTTCGTTGTTTGGATGACCTCTCCACTGGTTTTCTGAAGAATATTGAAG
ATTTCAAGGATAACCCAAAATTTACATTCATTAAAAACGATATAAAGGACTTTGACAATTGCTTGAATGCTACGAAAGAT
GTCAATTATGTTCTGCACCAAGCAGCATGGGGAAGTGTCCCAAGGAGCATTGAAATGCCTCTTTTTTACGAGCAGAACAA
TGTAATGGGCACTCTTAATATGATGGAGGCAGCAAGGCAAAATAAGGTAAAGAAGTTTATTTATGCTTCATCAAGTTCTG
TGTATGGTGATGAACCGAATCTTCCAAAGAAGGAAGGCAGCGAAGGGAATCTGCTTTCGCCCTATGCGCTTACAAAAAGA
ACCAATGAAGAGTATGGCAAGCTTTATCATAAGCTCTATGGACTAGATACCTATGGACTCCGTTACTTTAATGTTTTTGG
GAAACGCCAAAACCCTGATGGAGATTATGCTGCAGTAATACCCAAATGGATTAAGCAACTCATGAATAATGAGGCTCCGG
TTATTCATGGCGATGGTAAGCAGAGTAGGGATTTTACGTATATAGAGAATGTTATTGAAGCAAACCTTAAGACGTGTATG
GGAAGTTATGATGCAGCTGGTGAAGCCTATAATATTGCTTTTGGTGGTCGTGAATATCTTATTGATATCTTCAACGAACT
TACAGGTGCTTTGGGTATAAAAACAGAGCCAAAATATGGCCCTGATCGTGCCGGTGATATAAAACATAGTAACGCTGATA
TTAGTAAAGCAAAAACACTTCTTGGTTATGATCCTGACTGGAGTTTCGAACGTGGAATAAAGGCAGTTATAGAATGGTAT
AAGGTAACTCTAATTCCGTGA

Protein sequence : 
MGYEHLVFPKDSVFLVTGGAGFIGSNLCEAILRMGYIVRCLDDLSTGFLKNIEDFKDNPKFTFIKNDIKDFDNCLNATKD
VNYVLHQAAWGSVPRSIEMPLFYEQNNVMGTLNMMEAARQNKVKKFIYASSSSVYGDEPNLPKKEGSEGNLLSPYALTKR
TNEEYGKLYHKLYGLDTYGLRYFNVFGKRQNPDGDYAAVIPKWIKQLMNNEAPVIHGDGKQSRDFTYIENVIEANLKTCM
GSYDAAGEAYNIAFGGREYLIDIFNELTGALGIKTEPKYGPDRAGDIKHSNADISKAKTLLGYDPDWSFERGIKAVIEWY
KVTLIP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 1e-62 47
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 1e-62 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SpiBuddy_0264 YP_004246296.1 dTDP-glucose 4,6-dehydratase VFG0430 Protein 4e-63 47