Gene Information

Name : SpiBuddy_2527 (SpiBuddy_2527)
Accession : YP_004248532.1
Strain : Sphaerochaeta globosa Buddy
Genome accession: NC_015152
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 2746513 - 2747793 bp
Length : 1281 bp
Strand : +
Note : KEGG: hel:HELO_1150 TRAP transporter large transmembrane protein; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit

DNA sequence : 
ATGTTGGCATTGATCGTTTCTGTATTACTCATCGGTCTTATGATTTTCGGTGTTCCCGTTGCAGCAAGCATGGGTATCAC
TTCACTTGGCATCTTCGCAGCCCTTGGACAAGGCCAATATCTGGCAGTCATGCCGCAACGAATTTACGTGGGGGCGACCA
GCATTACCATGTTGGCGATTCCTTTTTTCATTCTTGCAGGGAACCTGATGAATACCGGGGGTATCACCGATAGGATTTTC
AACTTTGCTCGAGCCTGCTGCGGCCATTGGCCGGGGGGCTTGGGACAAGTAAACATTCTCTCAAGCGTCATCTTCTCAGG
CATGAGCGGCTCTGCAGTTGCCGATGCGGCAGGCTTGGGAGCTATTGAGATGAAGGCAATGGGAGATGCAGGCTTTGATA
AGCGATTTGCTGCAGGTATTACCGCAGCCTCTTCCACCATCGGGCCGGTAATCCCCCCAAGCATCCCCTTTGTCGTCTAC
GCTTCCATTGTAGGAGCTTCAGTCGGAAAACTCTTCATGGCAGGCTTCATTCCCGGCCTACTCATGGCAGCAGCAATGAG
CGTTGCCGTGTTTATCACCAGCAAACGCAAACACTACCCTGTTGAGGCAAAAATGCCTTGGAAAACGCGCTTGGTGTATT
TTTGGAAAGCCATTCCCTCTCTGATGACTGTGGTCCTGATCATCGGAGGTATCTGGGGAGGGTTTTTCACGGCAACCGAA
GCTGCAGTCATTGCAAGCTTTTATGCCCTCATTCTCGGAACGCTGGTTTATAAGGAAATCAAGCTTGCAGACCTTAAAAA
AGTCCTGACTAATTCAATGTTGCAAAGCTGTATGACACTTTTCATAATTGCTGTCGCAAACTTCCTCGCCTACTTCCTTA
CCCACCAAAGAATACCTAATATGATCATAACAGGTCTGACTACGCTCACCACCAATCCTACCATTTTGATCCTCATCATC
ATCTTCATCCTTCTGGTGCTTGGTTGCTTTGTGGAAGGGGTTGCCGTCATTCTTATTACTACACCTATCTTCATGCCGGT
AATCACCTCAATCGGTATGGACCCCGTTCAGTTTGGTGTAATCATGATCCTTGCTAGTATGATTGGGCTGCTCACACCCC
CTGTAGGCATGAGCCTGTATGCAGTTTCAAGCATATCAGGAGTTAGTGTCATCGAACTGTCCAAGGAAGTACTACCCTAT
GTCTTAGGTATTTTTTTGGTCCTCCTTGCGATTGCATTCTGGCCGCCGCTTTCCATGACACTGCCAAATCTTTTGGCCTA
A

Protein sequence : 
MLALIVSVLLIGLMIFGVPVAASMGITSLGIFAALGQGQYLAVMPQRIYVGATSITMLAIPFFILAGNLMNTGGITDRIF
NFARACCGHWPGGLGQVNILSSVIFSGMSGSAVADAAGLGAIEMKAMGDAGFDKRFAAGITAASSTIGPVIPPSIPFVVY
ASIVGASVGKLFMAGFIPGLLMAAAMSVAVFITSKRKHYPVEAKMPWKTRLVYFWKAIPSLMTVVLIIGGIWGGFFTATE
AAVIASFYALILGTLVYKEIKLADLKKVLTNSMLQSCMTLFIIAVANFLAYFLTHQRIPNMIITGLTTLTTNPTILILII
IFILLVLGCFVEGVAVILITTPIFMPVITSIGMDPVQFGVIMILASMIGLLTPPVGMSLYAVSSISGVSVIELSKEVLPY
VLGIFLVLLAIAFWPPLSMTLPNLLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-64 43
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-64 43
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-64 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SpiBuddy_2527 YP_004248532.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 7e-65 43