Gene Information

Name : SpiBuddy_1606 (SpiBuddy_1606)
Accession : YP_004247625.1
Strain : Sphaerochaeta globosa Buddy
Genome accession: NC_015152
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1747944 - 1749215 bp
Length : 1272 bp
Strand : -
Note : KEGG: csa:Csal_2978 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit

DNA sequence : 
ATGATTCTCTTTTTTGGAAGTTTTGTTGTTTTGTTGTTGATCGGTGTGCCTATCAGCATCTCCATCGGTGCCAGTGCCAT
CCTTGGGTGTCTGAATTTGGGGTATCCCTTGATGGTCATCGGTCAGAAAATGGTCAGCGGCATCGACTCCTTCTTGTTGA
TAGCCATTCCCTTGTTCATTCTTGCGGGCAATCTGATGAATGCCGGAAAGATTACCGAAAATATTTTTGACTTCGCCAAG
CGTCTGGTAGGATGGATTCCCGGCGGTCTTGGTCATGCAAATGTTGTTGCCAGCCTCATTTTTGCCGGTATGTCGGGCAG
TGCTGCCGCTGACGCCGGTGGCTTGGGGACCATCGAAATGCAAGCCATGACGACCAACGGATACGACGAGGAATTTTCTG
CAGGCATTACGGCAGCCTCTTCGGTCATTGGTCCCATTTTCCCCCCATCCATTCCCCTCATCATTTATGGATCAGTTGCT
TCGGTCAGTGTTTCCCAGCTCTTCATGGGAGGCGTGGTTCCCGGTCTTTTGATGGCTGTTGCTTTAATGGTCTTAGTGTT
TATCTTTGCCGTTAGGCGTAAGTATGAACGGACTGCGTTCAATATGCGGTTGCTCATCAAACAATTCTTTGCTTCTGTAT
TGTCTATCATCACCCCTCTGATTATTCTCAGCGGCTTTGTGTTCGGTTTGTTCACGCCAACCGAAGCATCCAGCGTTGCT
GTCGGATATGCTCTGGTTATTGCATTGTTTGTGTACCGCACCTTGGATTGGAAAACCTTCAAGCAGTGCCTGCTTGAAAG
TGCCATTACCAGTGCCAATACGCTGTTCATCATCGGTACATCAATGCTGTTCAGCTATGTACTGATAAAAGAAGGCGTTT
CCGCCCAGATGGCGGACTTTATTCTGGGCATCAGCGACAATCCCAATTTGATATTGCTGGTGATCAACATTCTGTTGTTG
GTTCTGGGAATGTTCATGGAGCCGGGTGCAATCCTAACCTTGATGCTGCCGGTTCTGCTTCCCATCGTCAAAGCATTGCA
GATCGATCTGGTGCATTTCGGGGTAGTGATGATTCTGAACCTGATGATCGGCCAGGTCACCCCTCCGTTTGGCGTCTGCC
TGTTCATTATCGGGGATGTTTCAAAAGTTTCATTGAATAAGATGTACAAGGCAATTCTGCCGTTCATCATTCCCTTGGTA
ATTGTTTTGTTTATGTGTACGTATATTCCGGAAGTAGTAACGTGGCTTCCTACCAAACTCTTGCAAGCCTAA

Protein sequence : 
MILFFGSFVVLLLIGVPISISIGASAILGCLNLGYPLMVIGQKMVSGIDSFLLIAIPLFILAGNLMNAGKITENIFDFAK
RLVGWIPGGLGHANVVASLIFAGMSGSAAADAGGLGTIEMQAMTTNGYDEEFSAGITAASSVIGPIFPPSIPLIIYGSVA
SVSVSQLFMGGVVPGLLMAVALMVLVFIFAVRRKYERTAFNMRLLIKQFFASVLSIITPLIILSGFVFGLFTPTEASSVA
VGYALVIALFVYRTLDWKTFKQCLLESAITSANTLFIIGTSMLFSYVLIKEGVSAQMADFILGISDNPNLILLVINILLL
VLGMFMEPGAILTLMLPVLLPIVKALQIDLVHFGVVMILNLMIGQVTPPFGVCLFIIGDVSKVSLNKMYKAILPFIIPLV
IVLFMCTYIPEVVTWLPTKLLQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 4e-41 46
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 4e-41 46
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 3e-41 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SpiBuddy_1606 YP_004247625.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-41 46