Gene Information

Name : Asphe3_32010 (Asphe3_32010)
Accession : YP_004242443.1
Strain : Arthrobacter phenanthrenivorans Sphe3
Genome accession: NC_015145
Putative virulence/resistance : Virulence
Product : ABC-type Mn2+/Zn2+ transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3392498 - 3393373 bp
Length : 876 bp
Strand : -
Note : PFAM: ABC 3 transport family

DNA sequence : 
GTGGAATTCCTCCTCGAGCCCCTCAGCTACGACTTCATGGTCCGGGCCATCGTCACCACGGCGCTCGCCGCCGTCGTCTG
CGCCGTCCTGAGCTGCTGGCTGGTGCTGATTGGCTGGTCCCTCATGGGCGACGCCGTCTCCCACGCGGTGCTGCCCGGCG
TCGTCCTGGCCTACATTGTGGGCGCCCCCTTCGCGCTCGGCGCCCTGGTGTTCGCGCTGATCGCCGTGACCCTGATCGGG
GTGGTCCGCAATACCAGCCGGGTCAAGGAGGACGCCGCGATCGGCATCGTGTTCTCCTCGCTCTTTGCCCTGGGCCTGGT
GCTGATCTCCGTGACGCCCAGCCAGACGGACCTGAACCACATTATCTTCGGCAACCTGCTGGGCGTCAGTGAATCCGACC
TGATCCAGGTGCTGGTGCTGGGGGTGGTGGCTTTCGTCATCCTGATCCTCAAGCGCCGCGACCTTACCCTCTACGCCTTC
GACCCCACCCATGCCCACGCCATCGGCCTGTCACCGCGCAGGCTCGGGGCGCTGCTGCTGGGGCTGCTGGCCCTGACATC
GGTGGTGGCCCTGCAGACCGTGGGCGTGGTCCTGGTGGTGGCCATGCTCATCATCCCGGGCGCCACGGCCTACCTGCTCA
CAGACCGGTTTTCCCGCATGCTGTTGATCGCCCCCGTGGTCTCGGCCCTGTGCTCCATTACCGGCATCTACGTCAGCTAC
TACCTCGACACGGCCTCCGGCGCCATGGTTGTACTCACACAGGGAATCGTGTTCGCCGCCGTCTACCTCTTCAGCCCGCG
GCAGGGGCTGATCGGAACCCGGCTGGCGAAAGTCCGGCGCAAAAAGGCGGCGGCGCTCGCGGCGGTACCGGGGTAA

Protein sequence : 
MEFLLEPLSYDFMVRAIVTTALAAVVCAVLSCWLVLIGWSLMGDAVSHAVLPGVVLAYIVGAPFALGALVFALIAVTLIG
VVRNTSRVKEDAAIGIVFSSLFALGLVLISVTPSQTDLNHIIFGNLLGVSESDLIQVLVLGVVAFVILILKRRDLTLYAF
DPTHAHAIGLSPRRLGALLLGLLALTSVVALQTVGVVLVVAMLIIPGATAYLLTDRFSRMLLIAPVVSALCSITGIYVSY
YLDTASGAMVVLTQGIVFAAVYLFSPRQGLIGTRLAKVRRKKAAALAAVPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-40 47
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-40 47
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-40 47
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-40 47
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-40 47
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-42 45
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-42 45
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-42 45
sitC NP_461784.1 permease Virulence SPI-1 Protein 6e-42 45
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-42 45
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-28 45
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-28 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Asphe3_32010 YP_004242443.1 ABC-type Mn2+/Zn2+ transporter permease BAC0441 Protein 4e-45 49
Asphe3_32010 YP_004242443.1 ABC-type Mn2+/Zn2+ transporter permease BAC0442 Protein 1e-39 48
Asphe3_32010 YP_004242443.1 ABC-type Mn2+/Zn2+ transporter permease BAC0352 Protein 2e-40 47
Asphe3_32010 YP_004242443.1 ABC-type Mn2+/Zn2+ transporter permease BAC0351 Protein 3e-42 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Asphe3_32010 YP_004242443.1 ABC-type Mn2+/Zn2+ transporter permease VFG0528 Protein 2e-40 47
Asphe3_32010 YP_004242443.1 ABC-type Mn2+/Zn2+ transporter permease VFG0527 Protein 3e-42 45