Gene Information

Name : Asphe3_28900 (Asphe3_28900)
Accession : YP_004242137.1
Strain : Arthrobacter phenanthrenivorans Sphe3
Genome accession: NC_015145
Putative virulence/resistance : Resistance
Product : cystathionine gamma-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : 4.4.1.1
Position : 3070057 - 3071220 bp
Length : 1164 bp
Strand : -
Note : PFAM: Cys/Met metabolism PLP-dependent enzyme

DNA sequence :
ATGTCCGCCTCGCACACCCAAGGTTTCAACACCCGCGCCGTCCACGCCGGCCAGGCCTTCGAGCCCCGCACCGGCGCGGT
GGTGCCGCCCCTGCACTTCAGTTCCACCTATGCCCAGGACGGCATCGGCGGGCTGCGCGCCGGGTATGAGTACGGCCGCG
GCGGCAACCCCACCCGGGACGCCCTGCAGGAACAGCTCGCCGCGCTCGAGGGCGGGACACACGCCTACAGCTTCAGCTCC
GGCCTGGCAGCGGAGGACTCACTCATCCGCGCCCTGACCCGGCCCGGGGACCACATCGTTCTCGGCAACGACGCCTACGG
CGGGACCTACCGGCTGATCAGCCGCGTCCTGGGCGGCTGGGGGATCGGCAACACCCCCGTGGACATGGCAGACCTGGACG
CCGTCCGCACGGCAGTGGCCGCCAACAAGACCAGGTTCGTGTGGGTGGAAACCCCGTCCAACCCGCTGATGAAGATCACC
GACATCGCGGCGCTCGCGGAGGTAGCGCACGACGCCGGGGCCCTCCTGGTGGTGGACAACACCTTCGCATCGCCCTACCT
GCAGACCCCGCTCGCCCTGGGTGCCGACGTCGTGGTCCACTCGACCACCAAGTACATTGGCGGGCATTCGGACGTGGTGG
GCGGCGCCGTCGTGGTTAAGGACGCCGACCTGGCGGAGAAGATCGGCTTCGTGCAGTTCGCAGTAGGTGCCGTCTCCGGC
CCCATGGACGCCTTCCTCACCACCCGTGGGCTGAAGACGCTCGGGGTGCGGATGGACCGGCACAGCCTCAATGGCCAGGC
CGTGGCGGAGTGGCTGCTGGAACGCCCGGAAGTGGAAGCTGTCCTGTACCCGGGCCTGCCGTCCCACCCGGGCCACGAGC
TGGCAAAGAGGCAGATGCGGAGCTTTGGCGGCATGGTCTCGGTGCAGTTCAAGGGCGGCGAGGCGGCTGCGCGGAAGGTG
GCCGAATCGACCTCAGTGTTCACGCTGGCGGAGTCGCTCGGCGGCATCGAGTCGCTGATGAACTACCCGTCGGAGATGAC
CCACGCCTCGGTCAAGGGCACCGAACTCGCCGTTCCGGTGAACCTGCTGCGCCTGTCCTGCGGGATCGAGGATGTGGAGG
ACCTGGTGGCGGACCTGGAGCAGGCGTTCAACACGCTGCCCTAG

Protein sequence :
MSASHTQGFNTRAVHAGQAFEPRTGAVVPPLHFSSTYAQDGIGGLRAGYEYGRGGNPTRDALQEQLAALEGGTHAYSFSS
GLAAEDSLIRALTRPGDHIVLGNDAYGGTYRLISRVLGGWGIGNTPVDMADLDAVRTAVAANKTRFVWVETPSNPLMKIT
DIAALAEVAHDAGALLVVDNTFASPYLQTPLALGADVVVHSTTKYIGGHSDVVGGAVVVKDADLAEKIGFVQFAVGAVSG
PMDAFLTTRGLKTLGVRMDRHSLNGQAVAEWLLERPEVEAVLYPGLPSHPGHELAKRQMRSFGGMVSVQFKGGEAAARKV
AESTSVFTLAESLGGIESLMNYPSEMTHASVKGTELAVPVNLLRLSCGIEDVEDLVADLEQAFNTLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 4e-68 45
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 7e-67 44
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 3e-50 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Asphe3_28900 YP_004242137.1 cystathionine gamma-lyase BAC0207 Protein 3e-59 43