Gene Information

Name : Asphe3_25900 (Asphe3_25900)
Accession : YP_004241849.1
Strain : Arthrobacter phenanthrenivorans Sphe3
Genome accession: NC_015145
Putative virulence/resistance : Unknown
Product : ATPase component of various ABC-type transporters with duplicated ATPase domain
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 2759504 - 2761228 bp
Length : 1725 bp
Strand : -
Note : PFAM: ABC transporter; oligopeptide/dipeptide transporter C-terminal region; TIGRFAM: phosphonate C-P lyase system protein PhnK

DNA sequence :
ATGACCGTCAATATCGATCCATTGTCCGGGCGGAACGCCGACGGGGAGCCCGACGGCGGCCGTCCTGTTCTCGACATTGA
CCACCTCCAGGTCACGTTCGCTACCGACGGCGGGCCAGTGTACGCAGTCAAGGACGTCAGCCTGGAAGTCAGGAAGGGCG
AAGTCCTGGCTATCGTGGGTGAGTCCGGCTCCGGCAAGACGGTCACAGCCAAGACCATCCTCGGGCTGCTGCCGGAGACG
GCCAGCAGTTCCGGTGCTGTGGTGATCAACGGGACCGACGTGATCAGCGTGAGCGCGGCACGCCTCCGCCAGATCCGTGG
CCGTGACGTGGCCATGGTTTTCCAGGAACCGTCCACCGCGCTGAACCCGGTGTTTACTGTCGGCTGGCAGATCGCCGAAG
GCATCCGCGCCCATGCAGGCAGCGGCGGAAAACGGGTGTCAGCCAGGGAGGCGAAGTCCCGCGCTGTTGACGCCTTGCGC
AAGGTGGGTATCCCCGATCCTGAACATCGGGTCAACTACTACCCCCACCAGTTCTCCGGAGGGCAGAAGCAGCGGGTGGT
CATCGCCGCGGCCCTGGCGTTGAACCCCGGGCTGATCGTCGCGGACGAGCCCACCACCGCCCTGGACGTCACCGTCCAGG
CGGAGATCCTGGAACTCCTGCGGGACCTGCGGGACAAGTACGGCACGTCGATCGTGCTGATCACGCACAATATGGGGGTG
GTGGCGGACTTGGCCGACCGGGTGGTGGTCATGTACCAGGGCGACGTGGTGGAGGAGGCGCCATCAAGGACACTGTTCGC
CGAGCCGCGGCAGGACTACACCCGGAAGCTGCTCGCCGCGGTGCCGCACCTGGGCCACAACTCCGCGTCGGAAGGACTCA
CCAGCCGGGCACACCAGGATGAGGAAGTCCTGGTGGAGGCGAACAACCTCACCATCGAATACCCGGGCAGGCTGGGAACG
CCGGCATTCAAGGCCGTGGACCGGGTCAGCTTCACCCTGTCCCGGGGCGAAGTGTTCGGGCTGGTAGGGGAATCAGGTTC
GGGGAAGACCACCATCGGACGCGCCATCGCTGGGCTGAACCGCACCACGGGCGGCAGCCTTCGCGTGCTGGGGTACGAAA
TGCTGAACCTCCGGGAGCGCACCTTCAAACCGCTCCGGAAGGACATCGGCTTCGTGTTCCAGGACCCGGCGGCCTCCTTC
AATCCGCAGCTGACCATCGGGGACTGCATTGCCGAACCCATGCTCATCCACACGAAGCCAAGCCCGGCGCAGGCGCGCAA
ACGCGTGGGCGAGCTCCTCGAATCAGTGCAGCTGCCGGCGTCGTACGCGGGGCGGTACCCGCACGAGCTGTCCGGCGGCC
AGCGGCAGCGGGCATCGCTGGCGCGGGCCCTCAGCCTCAATCCCCGGCTGCTGATAGCAGACGAGCCGACGTCGGCCCTG
GACGTTTCCGTGCAGGCGAAAGTCCTGGAGCTGTTCAGGGACATCCAGCAGGAGTTCGGCTTCGCCTGCCTCTTCATAAG
CCACGACCTTGCCGTGGTGGACACGCTGTCCTCCTGGGTGGGCGTGCTGTACAAGGGCAGGCTGGTGGAGCAGGGAATCG
GCAGCCAGGTGATGGGAAACCCGCAGCATGACTACACCCGGCGGCTCATCGCCTCGCTGCCGGTGCCGGACCCCCAGGAA
CAGGCGCGGCGCAGGGAAGAGCACCGCGCGCTGCTGGCCACCTGA

Protein sequence :
MTVNIDPLSGRNADGEPDGGRPVLDIDHLQVTFATDGGPVYAVKDVSLEVRKGEVLAIVGESGSGKTVTAKTILGLLPET
ASSSGAVVINGTDVISVSAARLRQIRGRDVAMVFQEPSTALNPVFTVGWQIAEGIRAHAGSGGKRVSAREAKSRAVDALR
KVGIPDPEHRVNYYPHQFSGGQKQRVVIAAALALNPGLIVADEPTTALDVTVQAEILELLRDLRDKYGTSIVLITHNMGV
VADLADRVVVMYQGDVVEEAPSRTLFAEPRQDYTRKLLAAVPHLGHNSASEGLTSRAHQDEEVLVEANNLTIEYPGRLGT
PAFKAVDRVSFTLSRGEVFGLVGESGSGKTTIGRAIAGLNRTTGGSLRVLGYEMLNLRERTFKPLRKDIGFVFQDPAASF
NPQLTIGDCIAEPMLIHTKPSPAQARKRVGELLESVQLPASYAGRYPHELSGGQRQRASLARALSLNPRLLIADEPTSAL
DVSVQAKVLELFRDIQQEFGFACLFISHDLAVVDTLSSWVGVLYKGRLVEQGIGSQVMGNPQHDYTRRLIASLPVPDPQE
QARRREEHRALLAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-72 41
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-72 41
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 1e-72 41
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-72 41
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 3e-97 41