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Name : Acav_0868 (Acav_0868) Accession : YP_004233358.1 Strain : Acidovorax avenae ATCC 19860 Genome accession: NC_015138 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 962384 - 963745 bp Length : 1362 bp Strand : - Note : TIGRFAM: Type II secretion system GspE; PFAM: Type II secretion system protein E; KEGG: dac:Daci_5698 general secretory pathway protein E; SMART: ATPase, AAA+ type, core DNA sequence : ATGCGCCACCCGCTTCCCTACGCCTTCGCGCGCAGTTCGCAACTGCTGCTGGAGGACGACGGCCACACCTGCGTGCTCTG GCACGGCCCCGCACCGGATGCCGGGGCACTGTCCGAGGTCATGCGCAAGCATGCCGTGCGGGAACTGATGCCGCTGGACG CGCACGCCATCGCGCAGCGCATCAGCGCGGCCTATTCGCAGGGGGAATCCAGCGCGGCGACGGTGGTGAGCGAGGTCGAA TCCGACGCCGACCTCTCGCGCATGATGCAGGAGCTGCCGGCCGTGGAGGACCTGCTGGAATCGGCGGGCGACGCGCCCAT CATCCGCATGCTCAACGCCCTGCTCACGCAGGCCGCGCGCGACGGTGCGAGCGACATCCACATCGAGCCCTACGAACGGC ATTCGAGCGTGCGCTTCCGCGTGGACGGCACGCTGCGCGAGGTGGTGCAGCCCAACCGCGCGCTGCATGCGGCGCTGATC TCCCGGCTGAAGATCATGGCGGACCTGGACATCTCCGAAAAACGCCTGCCACAGGACGGCCGCATCAGCCTGCGCCTGGG CACGCGCGCAATCGACGTGCGTGTCTCGACCCTGCCGAGCGCCCACGGCGAGCGCGCGGTGCTGCGCCTGCTGGACAAGA GCGAGAGCAAGCTGAGCCTGGAGGCCGTGGGCATGCAGGGCGACACGCTGCGCCGCTTCGACGCGCTGATCCACCAGCCG CACGGCATCGTGCTGGTGACGGGGCCGACAGGCTCGGGCAAGACCACCACGCTGTATGCGGCGCTGGGCCGGCTCGATGC CACCAGCAGCAACATCATGACGGTGGAGGACCCCATCGAGTACGAGCTGCCGGGCGTGGGCCAGACCCAGGTCAACAGCA AGATCGACCTCACCTTCGCCAAGGCACTGCGCGCCATCCTGCGCCAGGACCCGGACGTGATCATGATCGGCGAGATCCGC GATTTCGAGACCGCGCAGATCGCCATCCAGGCATCGCTCACGGGCCACCTGGTGCTGGCCACGCTGCACACCAACGACGC GGCCAGCGCGGTTACCCGCCTGACCGACATGGGCGTGGAGCCGTTCCTGCTCTCCAGCTCCCTGCTGGGCGTGCTGGCGC AGCGGCTGGTGCGCAAGCTCGATCCGACCGAGCCCAGTGGCTACCGCGGCCGCACGGGCGTGTTCGAGCTCCTGGTGGTG GACGACACGTTGCGCGCGCAGATCCACGGCCAGGCGGCCGAGGCGGAACTGCGCGCCACCGCGATCGCCGGCGGCATGAC GCTCATGCGCGAGGACGGCGAGCGGCTGGTGCGCGCAGGGATCACGAGCCCCGAGGAAGTGCTGCGCGTCACGCGCGAAT AG Protein sequence : MRHPLPYAFARSSQLLLEDDGHTCVLWHGPAPDAGALSEVMRKHAVRELMPLDAHAIAQRISAAYSQGESSAATVVSEVE SDADLSRMMQELPAVEDLLESAGDAPIIRMLNALLTQAARDGASDIHIEPYERHSSVRFRVDGTLREVVQPNRALHAALI SRLKIMADLDISEKRLPQDGRISLRLGTRAIDVRVSTLPSAHGERAVLRLLDKSESKLSLEAVGMQGDTLRRFDALIHQP HGIVLVTGPTGSGKTTTLYAALGRLDATSSNIMTVEDPIEYELPGVGQTQVNSKIDLTFAKALRAILRQDPDVIMIGEIR DFETAQIAIQASLTGHLVLATLHTNDAASAVTRLTDMGVEPFLLSSSLLGVLAQRLVRKLDPTEPSGYRGRTGVFELLVV DDTLRAQIHGQAAEAELRATAIAGGMTLMREDGERLVRAGITSPEEVLRVTRE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-89 | 52 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-89 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Acav_0868 | YP_004233358.1 | general secretory pathway protein E | VFG0182 | Protein | 5e-101 | 53 |
| Acav_0868 | YP_004233358.1 | general secretory pathway protein E | VFG1876 | Protein | 5e-98 | 51 |
| Acav_0868 | YP_004233358.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-90 | 51 |
