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Name : Acav_4671 (Acav_4671) Accession : YP_004237117.1 Strain : Acidovorax avenae ATCC 19860 Genome accession: NC_015138 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 5346115 - 5349318 bp Length : 3204 bp Strand : - Note : TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Protein of unknown function DUF3387; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal DNA sequence : ATGACAGAAGATCAACTCGAACAGGACGCACTGAGTTGGCTCGTCGAAGTCGGCTACACCCACCTGAGCGGCTACGACAT CGCCCCCGATGGCCCCGCACCTGAGCGCGACAGCTTCCGCCAGGTGCTGCTGCCCCAGCGCCTGCGCGACGCCATCGCCC GCCTGAACCCGCACATTCCCCTGGCAGCGCGCGAAGACGCCTTCAAGCAGGTGCAGGACCTGGGCACCCCGGTGCTGCTG TCGGCCAACCGGCACTTCCACCGGCTGCTGGTGGGCGGTGTGCCTGTGCAGTACCAGCAGGACGGCGAAACCCGGGGCGA CTTCGTGCGCCTGGTGGACTGGGGCAATGCACAGGCCAATGAATGGCTGGCTGTCAACCAGTTCTCGCTCAAGGGGCCGC ACCACACGCGCCGCCCGGACATCATCCTGTTCCTCAACGGCCTGCCCGTGGTGCTGCTGGAACTGAAGAACCCGGCGGAT GAAAACGCCAGCATCTGGAAGGCCTACGAGCAGATCCAGACGTACAAGGCGCAGATCCCCGATGTGTTCCAGTACAACGA GGTGCTGGTGGTGTCGGACGGCTCCGAGGCGCTGATGGGCTCGCTTTCCAGCAATGCCGAGCGCTTCATGGCCTGGCGCA CCATCGATGGCGTGGCGCTGGACCCGCTGGGCCAGTTCAACGAGCTGGAAACCCTGGTGCGCGGCGCGCTGGCCCCGGCC TATGTGCTGGACTATCTGCGCTACTTCGTGCTGTTCGAGGACGATGGCGGCCTGGTCAAGAAGATCGCGGGCTACCACCA GTTCCATGCGGTGCGTGCGGCCATAGAGCAGGTGGTGGCCGCATCCCGCCCGAGTGGTTCGCACAAGGGCGGGGTGGTGT GGCACACCCAGGGCAGCGGCAAGAGCATCACCATGACCTGCTTTGCCGCCCGGGTGATGCAAGAGCCGGCCATGCAGAAC CCCACCATCGTGGTCATCACCGACCGCAATGACCTGGACGGCCAGCTCTTCGGCGTGTTCAGTCTGGCGCAGGACCTGCT GCGCGAGCAGCCCGTGCAGGTCGAGACCCGGCAAGACCTGCGCGCCAAGCTTGCCAACCGGCCCTCCGGTGGCATCGTGT TCGCTACCATACAGAAGTTCATGCCGGGCGAAGACGAGGACACCTTCCCGGTGCTCTCGAACCGCAGCAACATCGTCGTG ATCGCCGACGAAGCGCACCGCACGCAGTACGGGTTCGAGGCGAAGCTCAAGACCATCAGGCGCAAGGCTGGCCAGCCGGA GGGCGCAGCGACTGCAAGGACCACGGGTGACGCAGCCAGCTCGGCGCTGACCGTCGATTTCGTTCCACCGGCGTATGAGG TGGAACACAAATACCAGGCCGGCTACGCCCAGCACTTGCGCGACGCCTTGCCCCACGCCACCTTCGTGGCCTTCACCGGC ACGCCCGTGTCCAGCGAAGACCGCGACACGCGCGCCGTGTTTGGCGATTACATCCATGTCTATGACATGCAGCAGGCCAA GGAAGACGGCGCCACCGTGGCCATCTACTATGAAAGCCGCCTGGCCAAGCTCAGCCTGAAGCAAGACGAGCTGCCGCACC TCGACGAAGAGGTGGACGAGCTGGCCGAAGACGAGGAAGAAAGCACCCAGGCCAGGCTCAAGAGCCGCTGGGCCGCCCTG GAAAAGGTGGTAGGCGCCGAGCCCCGCGTGGCGGCCGTGGCGGCGGATCTGGTCAAGCATTTCGAGGAGCGCAACAAGGC ACAGAGCGGCAAGGCCATGGTCGTGGCCATGAGCCGCGACATCTGCGTCCACCTGTACGACGAGATCACCAGGCTGCGCC CCGGCTGGCATGACGCAGACCCTGAAAAGGGCGCCGTCAAGATCGTGATGACCGGCTCGGCCAGCGACAAGGCCTTGCTG CGTCCGCACATCTACGGCGGCCAGGTCAAGAAGCGGCTGGAGAAGCGCTTCAAGGACCCGGCCGATCCGCTGCGCCTGGT GATCGTGCGCGACATGTGGCTGACCGGCTTCGACGCCCCTTGCGTGCACACCCTGTATGTGGACAAGCCCATGAAGGGCC ACAACCTCATGCAGGCCATCGCCCGCGTGAACCGCGTGTTCAAGGACAAGCAGGGCGGCCTGGTGGTCGATTACATCGGC ATTGGCAACGAACTCAAGGCCGCGATGAAGGAGTACACGGCCAGCAAGGGCCGAGGCAAACCCACGGTCGATGCCCACGA GGCCTACGCCGTGCTGGAGGAAAAGCTCGACGTGCTCCGCGCCATGCTGCATGGCTTCGACTACAGCGGCTTCCTCACGG GTGGGCACAAGGTGCTGGCGGGTGCGGCCAACCATGTACTGGGCCTGAAGAGCGAAGGCCGGCGCGATGGCAAAAAGCGT TTCGCGGATACCGCTCTGGCCATGAGCAAGGCCTTCACCCTGTGCTGCACGCTGGACGAAGCCAAGGCCGTGCGCGAAGA AGTGGCCTTCATGCAGGCCGTGAAGGTGATCCTGACCAAGAAGGACATCACCCAGCAGAAGAAGACCGACGAACAGCGCG AGCTGGCCATCCGCCAGATCATCGGCTCGGCGGTGGTGTCCGACCGCGTGGTGGACATCTTCGATGCCGTGGGTCTGGAC AAGCCCAACATCGGACTGCTGGACGACGATTTCCTGGCGCAGGTGAAGAACCTGCCCGAGCGCAACCTGGCGGTGGAACT GCTGGAGCGCCTGCTGGAAGGCGAGATCAAGAGCCGTTTCGCCACCAACGTGGTGCAGGAGCGCAAGTTCTCCGAGCTGC TGGGCAACGTCATCAAGCGCTACCAGAACCGTTCCATCGAAACCGCCCAGGTCATGGAAGAGCTGGTGGAGATGGCCAGG AAATTCCGCGAGGCTGCATCACGCGGCGAGAGCCTGGGCCTGACCGACGACGAGGTGAAGTTCTACGACGCGCTGATCCT CAACGAATCGGCGGCGCGGGAACTGAGCGACGAAACGCTGAAAAAAATCGCTCATGAGCTGACGACCAGCCTGCGCCAGA ACATCAGCGTGGACTGGGCGCACCGCGAGAGCGTGCGGGCCAAGCTGCGGCTGATGGTCAAGCGCATCTTGCGCAAGTAC AAGTACCCGCCTGACTTGGCTGATGCCGCGGTGGAGCTGGTACTGGAGCAGGCCGAGACGATCGGGGATGAGTGGGTCAA GTAA Protein sequence : MTEDQLEQDALSWLVEVGYTHLSGYDIAPDGPAPERDSFRQVLLPQRLRDAIARLNPHIPLAAREDAFKQVQDLGTPVLL SANRHFHRLLVGGVPVQYQQDGETRGDFVRLVDWGNAQANEWLAVNQFSLKGPHHTRRPDIILFLNGLPVVLLELKNPAD ENASIWKAYEQIQTYKAQIPDVFQYNEVLVVSDGSEALMGSLSSNAERFMAWRTIDGVALDPLGQFNELETLVRGALAPA YVLDYLRYFVLFEDDGGLVKKIAGYHQFHAVRAAIEQVVAASRPSGSHKGGVVWHTQGSGKSITMTCFAARVMQEPAMQN PTIVVITDRNDLDGQLFGVFSLAQDLLREQPVQVETRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTFPVLSNRSNIVV IADEAHRTQYGFEAKLKTIRRKAGQPEGAATARTTGDAASSALTVDFVPPAYEVEHKYQAGYAQHLRDALPHATFVAFTG TPVSSEDRDTRAVFGDYIHVYDMQQAKEDGATVAIYYESRLAKLSLKQDELPHLDEEVDELAEDEEESTQARLKSRWAAL EKVVGAEPRVAAVAADLVKHFEERNKAQSGKAMVVAMSRDICVHLYDEITRLRPGWHDADPEKGAVKIVMTGSASDKALL RPHIYGGQVKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIG IGNELKAAMKEYTASKGRGKPTVDAHEAYAVLEEKLDVLRAMLHGFDYSGFLTGGHKVLAGAANHVLGLKSEGRRDGKKR FADTALAMSKAFTLCCTLDEAKAVREEVAFMQAVKVILTKKDITQQKKTDEQRELAIRQIIGSAVVSDRVVDIFDAVGLD KPNIGLLDDDFLAQVKNLPERNLAVELLERLLEGEIKSRFATNVVQERKFSELLGNVIKRYQNRSIETAQVMEELVEMAR KFREAASRGESLGLTDDEVKFYDALILNESAARELSDETLKKIAHELTTSLRQNISVDWAHRESVRAKLRLMVKRILRKY KYPPDLADAAVELVLEQAETIGDEWVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 54 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
