Gene Information

Name : Acav_4289 (Acav_4289)
Accession : YP_004236740.1
Strain : Acidovorax avenae ATCC 19860
Genome accession: NC_015138
Putative virulence/resistance : Virulence
Product : flagellar protein export ATPase FliI
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 4902726 - 4904150 bp
Length : 1425 bp
Strand : -
Note : TIGRFAM: Flagellar export ATPase, FliI, clade 1; ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: dac:Daci_0641 flagellar protein exp

DNA sequence :
ATGGCTGACAGCGCCACCGTGCCCGATCCGCAAGTGCAGGATTCGCCCTGGGATGCGTTCCTGTCCGGTGCGCGCGAGCG
GCTGGCCGAGGGCACGGCGCTCGAAACCCGCGGAACCCTGACGCGCCTGACCGGGCTCGTCCTGGAGGCCGCGGGCATCC
GTGTCCCCGTGGGATCGCAATGCCTGGTGCAGATGCCCGGCCACGAGGCCGTGCTGGCGGAAGTCGTCGGCTTCTCGGGC
GACCGGGCCTTCCTCATGCCTGCGGGCGACATCCACGGCCTGTCCAGCGGCGCGAGCGTGGTGCCGGCCGCACCCTATGT
CCCCGTGCCCCGACTGGGCGATTCCACGCGCCCGTCGACGGCCGCGGGCATCCTGCGCCTGCCCATGGGCGACGGCCTGC
TGGGCCGCGTCGTGGACTCGCAGGGCCTGCCGCTCGACCATGGCGGGCCGGTGCAGGATGTTTCCTCCGAGCCCATGGAC
CGGCGCCAGATCAACGCCATGGACCGCGACCCCGTGCGCGAGATGCTGGATACCGGCGTGCGGGCGATCAATGCACTGCT
CTCGGTGGGCCGCGGGCAGCGCCTGGGGCTTTTCGCCGGGTCCGGCGTGGGCAAGAGCGTGCTGCTCGGCATGATGGCCC
GCTATACGCAGGCCGACGTCATCGTCGTGGGGCTCATCGGCGAGCGGGGGCGCGAGGTCAAGGAGTTCGTCGAGGACATC
CTGGGCGAACAGGACCGCGAGCGCGCCGTGGTGGTTGCCGCGCCGGCCGATGCGCCGCCGCTGCTGCGCATGCAGGGCGC
TGCCTACGCGACGGCCATCGCCGAGCACTTCCGGGACAAGGGCAAGCACGTGCTGCTGCTCATGGATTCGCTCACCCGCT
ATGCCATGGCCCAGCGCGAGATCGCGCTCGCGATCGGCGAGCCACCGGCCACCAAGGGCTATCCGCCGAGCTGCTTCGCC
AAGCTGCCGGCGCTGGTCGAGCGCAGCGGCAACGGACTGCACGGCGTGGGCTCCATCACTGCCTTCTATACCGTCCTGTC
CGAAGGGGATGACCAGCAGGACCCCATTGCCGACTCGGCCCGGGCCATCCTCGACGGCCACATCGTGCTGTCCCGCGCAC
TGGCGGAGACCGGGCATTTCCCGGCGATCGACATCGAGCAGTCCGCGTCGCGGGTCATGCACAACGTGGCCTCGCGCGAG
CATTTCGACCTCGCGCGCCGGTTCCGTGCCGTGTACTCGCGCTATCAGAAGAGCCGCGACCTGATCCAGGTCGGCGCCTA
CATGAGCGGCTCCGACCCGGCGCTGGACGAGGCGATCCGCCTGCAGCCGGCAATGGCTGCCTTCCTGCAGCAGGACATGT
TCGAGGCCGCGCCCATGCAGGACAGCCTGCATGCGATGGCGGCCGTACTGGGCCCGCAGGCCTGA

Protein sequence :
MADSATVPDPQVQDSPWDAFLSGARERLAEGTALETRGTLTRLTGLVLEAAGIRVPVGSQCLVQMPGHEAVLAEVVGFSG
DRAFLMPAGDIHGLSSGASVVPAAPYVPVPRLGDSTRPSTAAGILRLPMGDGLLGRVVDSQGLPLDHGGPVQDVSSEPMD
RRQINAMDRDPVREMLDTGVRAINALLSVGRGQRLGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKEFVEDI
LGEQDRERAVVVAAPADAPPLLRMQGAAYATAIAEHFRDKGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSCFA
KLPALVERSGNGLHGVGSITAFYTVLSEGDDQQDPIADSARAILDGHIVLSRALAETGHFPAIDIEQSASRVMHNVASRE
HFDLARRFRAVYSRYQKSRDLIQVGAYMSGSDPALDEAIRLQPAMAAFLQQDMFEAAPMQDSLHAMAAVLGPQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-74 51
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-64 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-64 49
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-64 49
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-64 49
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-64 49
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-68 46
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-68 46
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 3e-70 46
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 6e-71 46
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 6e-71 46
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-71 46
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-70 46
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-70 46
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-71 46
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-64 46
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-64 46
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-56 45
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-56 45
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 3e-56 45
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-56 45
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 5e-63 44
lscN AAO18044.1 LscN Virulence TTSS locus Protein 6e-69 44
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 2e-61 44
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 2e-61 44
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 7e-57 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 5e-63 44
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 1e-64 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 6e-65 44
escN AAL57542.1 EscN Virulence LEE Protein 2e-63 44
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-63 44
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-63 44
escN CAC81862.1 EscN protein Virulence LEE II Protein 3e-63 44
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-63 44
escN AAK26715.1 EscN Virulence LEE Protein 2e-63 44
unnamed AAL06369.1 EscN Virulence LEE Protein 6e-62 43
escN AAC38383.1 EscN Virulence LEE Protein 4e-63 43
escN NP_290268.1 hypothetical protein Virulence LEE Protein 3e-63 43
ECs4568 NP_312595.1 EscN Virulence LEE Protein 3e-63 43
escN AAC31513.1 L0034 Virulence LEE Protein 2e-63 43
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-63 43
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-63 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 1e-61 42
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 7e-61 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-61 42
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-60 42
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 3e-64 42
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 5e-56 42
invC AAS66861.1 InvC Not tested SSR-2 Protein 3e-58 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG2331 Protein 1e-112 61
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG2499 Protein 2e-117 61
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG1254 Protein 3e-106 59
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG0515 Protein 1e-64 49
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG0048 Protein 3e-75 46
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG0192 Protein 5e-71 45
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG0555 Protein 1e-56 45
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG2144 Protein 2e-75 44
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG0390 Protein 6e-70 43
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG0812 Protein 1e-63 43
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG0730 Protein 3e-63 43
Acav_4289 YP_004236740.1 flagellar protein export ATPase FliI VFG1008 Protein 1e-54 41