Gene Information

Name : Acav_4282 (Acav_4282)
Accession : YP_004236733.1
Strain : Acidovorax avenae ATCC 19860
Genome accession: NC_015138
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4897376 - 4898155 bp
Length : 780 bp
Strand : -
Note : KEGG: dia:Dtpsy_3071 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein

DNA sequence :
ATGCGCTCCGGCGTGAACCGGCCGCGGCATGCCGGCCTGGCCATGGCGGGCGTGCTCGCCTGCGCGGCGCTGGCCCCCGC
CTCCGCCTGGGCGCAGGCCGCTGGCGGCGGCAGCCTGCCGGTCCTCATCGGCTCCGGCGCGGGCGGGGCCAGCTATTCGG
TGCCCATCCAGACCCTGCTGTTCTTCACGGCACTGTCCTTCCTGCCGGCCCTGCTGCTCATGATGACCGGCTTCACCCGC
ATCGTCATCGTGTTGTCGCTGATCCGCCAGGCGATCGGCACGCAGTCCGCGCCGCCGAACCAGGTCATCATCGGCCTGTC
GCTGTTCCTGACGTTCTTCGTCATGGGCCCCACGTTCGACCGCGTCTATGCGGACGCCTACCTGCCCTACAGCAACAACA
CGATCACCTTCGAGCAGGCCGTCGAGCGCGCGGAGGCGCCCATGCGCTCCTTCATGCTCAAGCAGACAAGGCAGTCGGAT
TTCGCCCTGTTCGCCCGGCTCGCGAAGCTGCCGTCCGGGGCCACGGCGGAGACCGCGCCCATGCGCGTGCTGGTGCCCGC
CTTTGTCACCAGCGAACTCAAGTCGGCCTTCCAGATCGGGTTCATGATCTTCATCCCGTTCCTGGTCATCGACATGGTGG
TCTCCAGCATCCTCATGTCACTGGGCATGATGATGCTGTCGCCGGTGCTGGTGGCGCTGCCGTTCAAGCTGATGCTGTTC
GTGCTGGCGGACGGATGGAACCTGCTGCTCGGCTCCCTGGCCGCCAGCTTCGTGACCTGA

Protein sequence :
MRSGVNRPRHAGLAMAGVLACAALAPASAWAQAAGGGSLPVLIGSGAGGASYSVPIQTLLFFTALSFLPALLLMMTGFTR
IVIVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVMGPTFDRVYADAYLPYSNNTITFEQAVERAEAPMRSFMLKQTRQSD
FALFARLAKLPSGATAETAPMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLF
VLADGWNLLLGSLAASFVT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-20 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-20 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acav_4282 YP_004236733.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-63 66
Acav_4282 YP_004236733.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-61 65
Acav_4282 YP_004236733.1 flagellar biosynthetic protein FliP VFG1259 Protein 4e-56 60
Acav_4282 YP_004236733.1 flagellar biosynthetic protein FliP VFG2016 Protein 3e-51 55