Gene Information

Name : Acav_3468 (Acav_3468)
Accession : YP_004235936.1
Strain : Acidovorax avenae ATCC 19860
Genome accession: NC_015138
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein RibD
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : 1.1.1.193
Position : 3939182 - 3940315 bp
Length : 1134 bp
Strand : +
Note : PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; manually curated; KEGG: vap:Vapar_3108 riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-te

DNA sequence :
ATGTCCACGCCTGTCGCCCCGGCCTCTCTCCCTACCGATTTCATGCAACTTGCGCTCCGGCTAGCAGAAGAAGGGCTCTA
CAGGACCTCCCCCAATCCCCGCGTGGGCTGTGTACTGGTCGATGCCCGCCAGCAGATCATCGGCCAGGGATCGACCCAGC
GCGCCGGCGGGCCCCATGCAGAAGTGATGGCGTTGCGCGATGCCCGGGCACGCGGCCATGCCACCCAGGGCGCCATCGCC
TACGTCACCCTGGAGCCCTGCTCCCACCACGGACGCACGGGGCCCTGCTGCGATGCGCTGGTCGAAGCTGGCATCGCCCG
CGTGGTCGCCTCGCTGGGTGACCCCAACCCGCGAGTCGCCGGCCAGGGGTTCGAGCGCCTGCGCGCTGCGGGGGTCGAAG
TGGAAGTCGGCCCGGGCGCAGAGGCCTCACGGGAGCTGAACATCGGCTTTCTCAGCCGCATGGTGCGGCGCATGCCCTGG
GTGCGGCTGAAGTCCGCAGCGTCCCTGGACGGAATCACGGCACTGCCGGACGGGCAGAGCCAATGGATCACCTCCGCCGC
GGCGCGGGCTGACGTGCATGCCTGGCGCGCGCGGGCCTGTGCGGTCCTCACGGGCGTGGGCACCGTGCTCGCGGACGATC
CGCGGCTGGATGTGCGCGAGGTGCCCACCGAACGCCAGCCCTGGGTCGCGGTGCTCGACAGCCACTTGCGCACCCCGCCG
GATGCCGCTTTGCTGCGAGCTCAAGCCCGTGACGTAGTGATCTATTGCGCGATCCGGGATGAATCGCGGGAGCGCGCGCT
CTGCGCCTCCGGGGCGACCATCGTGCATCTGCCGGGTCCCGATGGGCGGGTTGCCTTGCGCGACGTGATGGCGGACCTCG
CAGCGCGGGAGGCCAACGAGGTGCATGTTGAAGCAGGCGCCATCGCCAGCGGAGCGCTGTGCGCGGCCGGCCTGGTGGAC
GAAGTGCTGCTCTATCTCGCCCCCAAGCTCCTGGGGCAAGGAAGAGGCATCGCGCCATTTGGCCCCCTTCCGGACCTGGG
ACAGGCGCTCGGGCTCACCATCCGCTCGGTCGCCCAGGTCGGTCCGGACCTCCGGGTGTGCGCGAGGGTGGCAGGCCGGG
AATCCGTGGCCTGA

Protein sequence :
MSTPVAPASLPTDFMQLALRLAEEGLYRTSPNPRVGCVLVDARQQIIGQGSTQRAGGPHAEVMALRDARARGHATQGAIA
YVTLEPCSHHGRTGPCCDALVEAGIARVVASLGDPNPRVAGQGFERLRAAGVEVEVGPGAEASRELNIGFLSRMVRRMPW
VRLKSAASLDGITALPDGQSQWITSAAARADVHAWRARACAVLTGVGTVLADDPRLDVREVPTERQPWVAVLDSHLRTPP
DAALLRAQARDVVIYCAIRDESRERALCASGATIVHLPGPDGRVALRDVMADLAAREANEVHVEAGAIASGALCAAGLVD
EVLLYLAPKLLGQGRGIAPFGPLPDLGQALGLTIRSVAQVGPDLRVCARVAGRESVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 3e-42 44
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 3e-42 44