|
Name : Acav_3313 (Acav_3313) Accession : YP_004235782.1 Strain : Acidovorax avenae ATCC 19860 Genome accession: NC_015138 Putative virulence/resistance : Virulence Product : TRAP dicarboxylate transporter subunit DctM Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1593 EC number : - Position : 3767905 - 3769188 bp Length : 1284 bp Strand : - Note : KEGG: ctt:CtCNB1_0523 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit DNA sequence : ATGGCCATCACCCTTTTCGTTTCCGCCGTCCTGCTGATGGCGCTGGGCTTTCCCGTCGCGTTCGCGCTCGCCATGTCGGC CGCCATCGCGGTCTTCGTGGGCGGGCGCTATCCGCAGCTGATCGTGTTCAAGGAGATGTTCACGGGCATCGACAGCTTTC CGCTGATGGCCGTGCCCTTCTTCATCCTCGCGGCCGAGATCATGTCCGGCGGCGCGCTCACCGTGGTGCTGCTGCGCTTC GCGGCGCAGTTCGTGGGCCACCTGCGCGGCGGGCTCGGCCACGCCAACATCCTCTCGCTCACGCTGTTCTCGGGCATCTC CGGTTCGGCCCTGGCCGACGCGGCCGGTCCCGGCTCGATGATGGTCAAGATGATGGACAAGGCCGGCTATTCGCGCGCCT ACGCCGCCGCGCTCACGGCCAGCACCGCCATCGTGGGGCCGATCATCCCGCCCTCGATCATCATGATCATCTACGCGCTG CAGGACGAGCAGGTCTCGGTGGGCGCGCTCTTCATCGCCGGTTTCGCGCCGGGCATCCTCATCGCGCTGGCGATGGCGTT GGTCAACTGGCGGGTGTGCGTGAAGCGCGACTACCGCTCGCGCGAGCCGCGCCCCACGGGCCGCGAAATGCTCGCCAACA GCATCCGCGCCATCCCGGCCCTGATGCTGGTGGTGCTGATCCTGGTGGGTATCCGCTTCGGCATCTTCACGCCGACCGAG GCCTCCGTGGTGGCCGTGTTCTACGCCCTCGTCTGCGGCAAGTGGATCTACCGCACGCTGGAGTGGAAGGCCCTGCCGCA CATCGCCGCGCGCTCGGCACTGCTCACCGCCTCGGTGTTGCTGGTGGTGGCCGCCTCGGCCGCCTTCGCCTGGGTGCTGA CGGTGGAAGGCGTGCCCCAGCAACTGGCCGAGACGATCGTGGGCTGGAACCTCTCGCCCGTCACCTTCCTCATCGCGGTC AACATCCTGCTGCTGCTCTTCGGCATCTTCATGGAGCCGCTGCCGGGCGTGATGATCCTCGTGCCCATCCTCGCGCCCAT CTCGGCGGCGCTGGGCATCGACCCGATCCACTTCGCGATGGTGGTGATCGTCAACCTCACGCTGGGCATGATCACCCCGC CCGTGGGCGGCCTGCTGTTCGTCACCTCGGTCGCCACCAAGGTGCCGCTGGCGGCGCTCACGCGCGAGTTGCCGCCGTTC CTCGTGGCCCACCTGATCGTGCTGGCCCTGCTCACCTTCGTGCCCGCCATCTCCACCTGGCTGCCGCACGCGCTGGGCTT CTGA Protein sequence : MAITLFVSAVLLMALGFPVAFALAMSAAIAVFVGGRYPQLIVFKEMFTGIDSFPLMAVPFFILAAEIMSGGALTVVLLRF AAQFVGHLRGGLGHANILSLTLFSGISGSALADAAGPGSMMVKMMDKAGYSRAYAAALTASTAIVGPIIPPSIIMIIYAL QDEQVSVGALFIAGFAPGILIALAMALVNWRVCVKRDYRSREPRPTGREMLANSIRAIPALMLVVLILVGIRFGIFTPTE ASVVAVFYALVCGKWIYRTLEWKALPHIAARSALLTASVLLVVAASAAFAWVLTVEGVPQQLAETIVGWNLSPVTFLIAV NILLLLFGIFMEPLPGVMILVPILAPISAALGIDPIHFAMVVIVNLTLGMITPPVGGLLFVTSVATKVPLAALTRELPPF LVAHLIVLALLTFVPAISTWLPHALGF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 1e-36 | 41 |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 1e-36 | 41 |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 8e-37 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Acav_3313 | YP_004235782.1 | TRAP dicarboxylate transporter subunit DctM | VFG1110 | Protein | 4e-37 | 41 |
