Gene Information

Name : Acav_2465 (Acav_2465)
Accession : YP_004234944.1
Strain : Acidovorax avenae ATCC 19860
Genome accession: NC_015138
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 2771545 - 2772825 bp
Length : 1281 bp
Strand : +
Note : KEGG: dia:Dtpsy_1874 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGGTCGTGACCCTCATCTTCCTCGGCGTACTGATCGGCGGCATGGCCATCGGCATGCCGATCGCTCAGTCGCTGATCCT
GACCGGCGTTGCCCTCATGTGGCACCTGGACTTCTTCGATTCCCAACTGCTGGCGCAGAACCTGCAGGCGGGCTTCGACA
ACTTCCCGCTGCTGGCCGTGCCCTTCTTCATCCTGGCCGGCGAACTGATGAACGCGGGCGGCCTCTCGCGCCGCATCATC
GACCTGGCGCGCGCCTTCGTCGGCCACATCCGCGGCGGCCTGGGCTTCGTGGCCATCGGCGCCGCGGTGCTGCTCGCGTC
GATGAGCGGCTCGGCCATCGCCGACACGGCGGCGCTCGCCACCATCCTGCTGCCGATGATGCGCCAGCAGAACTACCCGT
CCAGCTACAGCGCCGGCCTGCTGGCATCGGGCGGCATCATCGCGCCGATCATTCCGCCCTCGATGCCGTTCGTGATCTAT
GGCGTGACCACCAACACCTCGATCAGCAAGCTGTTCCTGGCGGGCGTGTTCCCCGGGCTGATGATGGGCATCTTCCTCAT
CCTCGCCTGGTGGTGGATCGCGCGCAAGCACCAGCTGGCGGCGATGGAGCGCGTGGCCTGGGGCGCCCGGATGCGCGCGC
TGCTGCACAGCTTCTGGGCCATGATGATGCCGGTCATCATCCTGGGCGGGCTCAAGGGCGGCATCTTCACGCCCACCGAA
GCCGCCGTGGTGGCTGCCGTGTACGCGCTCATCGTCTCGATGTTCGTCTATCGCGAGATGACGTGGGGCCGGCTCTACGA
GGTGTTCCTGGCCGCGTGCAAGACCACCGCGGTGGTGATGTTCCTCTGCGGCGCGGCCACCGTCACCGCCTACATGATCA
CCCTGGCCGACCTGCCCAACCTGCTGGCCGACAGCTTCGCCGGCGTCATGGGCAACCCCGTGCTGTTCATGGCGCTCATG
ATGGTGTTCCTGCTGGTGGTGGGCACGGCCATGGACCTCACGCCCACCATCCTGATCTTCGGCCCCGTGTGCGTGCCGCT
CGCCGTCAAGGCCGGCATCGACCCGGTGTACTTCGGCTTCATGTTCATCTACGTGGGCTGCATCGGCCTCATCACGCCAC
CCGTGGGCACGGTGCAGAACGTGGTGGCCGGCGTGGGCCGGCTGCGCATGGAAACCGTCATCCGCGGCACCACGCCGTTC
CTGCTGGTGTACGTGCTGCTGCTCATCCTCTTCGTGCTCTTCCCGCAGATGGTGACCGGGCCACTGCGCTGGCTCCACTG
A

Protein sequence : 
MVVTLIFLGVLIGGMAIGMPIAQSLILTGVALMWHLDFFDSQLLAQNLQAGFDNFPLLAVPFFILAGELMNAGGLSRRII
DLARAFVGHIRGGLGFVAIGAAVLLASMSGSAIADTAALATILLPMMRQQNYPSSYSAGLLASGGIIAPIIPPSMPFVIY
GVTTNTSISKLFLAGVFPGLMMGIFLILAWWWIARKHQLAAMERVAWGARMRALLHSFWAMMMPVIILGGLKGGIFTPTE
AAVVAAVYALIVSMFVYREMTWGRLYEVFLAACKTTAVVMFLCGAATVTAYMITLADLPNLLADSFAGVMGNPVLFMALM
MVFLLVVGTAMDLTPTILIFGPVCVPLAVKAGIDPVYFGFMFIYVGCIGLITPPVGTVQNVVAGVGRLRMETVIRGTTPF
LLVYVLLLILFVLFPQMVTGPLRWLH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 4e-38 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 4e-38 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 3e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acav_2465 YP_004234944.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-38 41