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Name : BC1001_6056 (BC1001_6056) Accession : YP_004232477.1 Strain : Genome accession: NC_015137 Putative virulence/resistance : Virulence Product : Yop virulence translocation R Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4790 EC number : - Position : 2750534 - 2751184 bp Length : 651 bp Strand : + Note : KEGG: bgf:BC1003_3642 Yop virulence translocation R; TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein DNA sequence : ATGGTCCAGTTCAGTGACATCACAGGACTGCTGATCGTCATCGTTGCGATCAGCCTCGTGCCTTTCGTCGCGATGGTCGT CACCTCGTACGCGAAGATCGTCGTCGTGCTCGGTCTGCTGCGCAATGCGCTCGGCGTGCAGCAGGTGCCGCCCAACATGG TGCTCAACGGCGTCGCGATTCTCGTGTCGCTCTACGTGATGGCGCCGGTCGGCATGCAGGCCATGCAGTCCATGCAGGGG CAGGCCATTGCCGGCCAGCCCACTCAGGCGTTGATCCAGGTGTTCAGCGCCGCGCGCGAACCGTTCCGCACGTTCTTGCA GAAGCACACGAACGAACGCGAGAAACGCTTCTTCATCCGCTCGGCGAACGTGGTGTGGCCGAAGGACGCCGCCGCCAGCC TGCACGAGAACGACCTCATCGTGCTCGCGCCCGCCTTCACGCTGACCGAGTTGACCGACGCGTTCAAGATCGGCTTTCTG CTCTACATCGCCTTTATCGTCATCGACCTGATCATCGCCAATGTGCTGCTCGCCATGGGTCTGAACCAGGTGACGCCGAC CAACGTGGCCATTCCGTTCAAGCTGCTGCTGTTCGTCGTGATGGACGGCTGGTCGACTCTGATTCACGGCCTCGTGATGA CCTATCGCTAG Protein sequence : MVQFSDITGLLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSLYVMAPVGMQAMQSMQG QAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKDAAASLHENDLIVLAPAFTLTELTDAFKIGFL LYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTYR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 6e-63 | 70 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 1e-62 | 69 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-66 | 68 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-66 | 68 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-66 | 68 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 2e-65 | 67 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 2e-65 | 67 |
| hrcR | YP_198720.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 5e-66 | 67 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 2e-44 | 49 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 1e-35 | 43 |
| hrcR | NP_791222.3 | type III secretion protein HrcR | Virulence | Hrp PAI | Protein | 4e-31 | 42 |
| hrcR | AAG33884.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-31 | 42 |
| hrcR | AAB06005.2 | HrcR | Virulence | Hrp PAI | Protein | 2e-36 | 42 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 4e-37 | 42 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 2e-36 | 42 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 6e-37 | 42 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 4e-37 | 42 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 6e-37 | 42 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 4e-37 | 42 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-37 | 42 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 4e-37 | 42 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-37 | 42 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 4e-37 | 42 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 4e-37 | 42 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 2e-35 | 42 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 7e-36 | 41 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 7e-36 | 41 |
| hrcR | ABQ88359.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-30 | 41 |
| hrpW | AAB05075.1 | HrpW | Virulence | Hrp PAI | Protein | 3e-30 | 41 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 4e-36 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| BC1001_6056 | YP_004232477.1 | Yop virulence translocation R | VFG0188 | Protein | 8e-49 | 49 |
| BC1001_6056 | YP_004232477.1 | Yop virulence translocation R | VFG0394 | Protein | 3e-48 | 48 |
| BC1001_6056 | YP_004232477.1 | Yop virulence translocation R | VFG0044 | Protein | 3e-44 | 46 |
| BC1001_6056 | YP_004232477.1 | Yop virulence translocation R | VFG0827 | Protein | 2e-37 | 42 |
| BC1001_6056 | YP_004232477.1 | Yop virulence translocation R | VFG0715 | Protein | 2e-36 | 41 |
