Gene Information

Name : BC1001_5688 (BC1001_5688)
Accession : YP_004232121.1
Strain :
Genome accession: NC_015137
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2349768 - 2350502 bp
Length : 735 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein

DNA sequence : 
ATGCCTGGATCGAACCAGCAGGTCGGGCAGTATCCGCTGTCGTCGCTGTGCGGGGTGTTGTCGGTCAGCGTGAACGGTTA
TCGCGCGTGGAAGCGCGGCGGCAAGTCGGGGCGAACGCGACTGACGGACACGCAATTGCTGACGCTGATCTGGACGGTGC
ACGCCGAGGTCAAAGGAGCATACGGTTCGCCGCGCATGACTGAGGAAATCCGTCATCGAGGCTTTCCGGCCAGCAAGGAG
CGCGTGGAACGGCTGATGCGTGAGCATGGCATCCGGGCGCGGCACAAGCGCCGTTACCGGGTGACGACCGATTCGAAACA
CAAGCTGCCGGTCGCGCCAAACCTGTTGAACCGCGAGTTCACGCCCGCCGCGCCGAATCAGGTGTTCAGCTCGGACATCA
CATATATCTGGACCGACGAGGGCTGGCTGTACCTGGCCGTGGTGCTCGACCTGTTCAACCGGGAGGTGGTGGGCTGGTCG
TTCAAGCCGCGCATGACGGCGGGTCTCGTGACGGACGCGCTGACGATGGCTCGGTTCCGCCGCCGTCCCGCGCCGGGTGC
ACTGTGCCATTCGGATAGAGGCAGCCAATACGCGAGTCACGAGTTCCAGCGCAAGCTGAGCGCCTACGGCATGCGCTGCT
CAATGAGTCGCAAGGGAAACTGTTGGGACAATGCCCCAACGGAAAGCTTCTTCAACAGCTTGAAGAACGAACGGGCTCAC
GCCACTAGCGCGTAG

Protein sequence : 
MPGSNQQVGQYPLSSLCGVLSVSVNGYRAWKRGGKSGRTRLTDTQLLTLIWTVHAEVKGAYGSPRMTEEIRHRGFPASKE
RVERLMREHGIRARHKRRYRVTTDSKHKLPVAPNLLNREFTPAAPNQVFSSDITYIWTDEGWLYLAVVLDLFNREVVGWS
FKPRMTAGLVTDALTMARFRRRPAPGALCHSDRGSQYASHEFQRKLSAYGMRCSMSRKGNCWDNAPTESFFNSLKNERAH
ATSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 7e-40 49
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 7e-40 49
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 7e-40 49
tnpB CAB61574.1 transposase B Not tested HPI Protein 4e-33 46
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-33 46
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 3e-30 44
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 3e-30 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_5688 YP_004232121.1 integrase catalytic subunit VFG1484 Protein 1e-30 44