Gene Information

Name : BC1001_3810 (BC1001_3810)
Accession : YP_004230281.1
Strain :
Genome accession: NC_015137
Putative virulence/resistance : Virulence
Product : two component sigma-54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 245177 - 246547 bp
Length : 1371 bp
Strand : -
Note : KEGG: bgf:BC1003_3851 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPa

DNA sequence : 
ATGGCGACCATCCTGATCATCGATGACGACGACGCGTTCCGCGAAGGCCTTGCGGAAACCGTGCAGGACCTCGGCTACTC
GCCGTCCGAAGCCCGGTCCGGCGATGACGCGTTCGAGCAGTTGCGCGGGGGTCCCGCGCCCGACTGCATCTTTCTCGACT
TCCGCTTGCCGGGCGCTGACGGCCTCGCCGTGCTGGAAACGCTGCGCAAAACGCCGGGGCTACAGAGCGTACCGGTCGTG
ATGCTCACTGCGCACGCGACAAGCGACAACACCATCGGGGCAATGCGGCTCGGCGCTTTCGAGCACCTCACCAAGCCGGT
CGGACGGGACGAGATCGCCGCGCTGCTCAAGCGCATTCTGTCGGCCCAGGCCGACGCGCCCGCCGCACGCGTGTTCCCCG
ACGAGGCACGATCCGATGAGCCGCAACTGCTCGGCGTGAGCGAGACCATGCGTGAGGTGCAGAAGCGCCTCGGCCGCGCG
GCGGGTGGCGATTCGACCGTGCTGATCACCGGTGAAACGGGGACCGGTAAGGAAATCGCGGCGCGGGTGCTGCACCGTGC
GTCGGCGCGCGCGAGCGGTCCCTTCGTCGCGGTGAACTGTGCGGCCATTCCCGACGATCTGCTCGAGAGCGAACTCTTCG
GACACGGCAAAGGCGCATTCACGGGTGCACAGGGCGACAGGCGAGGGCGCGTCGAGGAAGCGCATGGCGGCACGCTCTTT
CTCGATGAAGTCGGCGATATGTCGCTTCCCATGCAAGCGAAGCTCCTGCGCGTGCTTCAGGAGCGGCAAGTCACCCCTCT
CGGCACGAACCGGATCGTGACGGTTGATGTGCGTGTCGTCGCCGCCACGCATCGCGATCTCGCTTCGATGGTCGCGGCCG
GGACGTTCCGGCAAGACCTGCTGTTTCGTCTCAACGTCATTCCGCTGCATATGCCGCCGCTGCGCGAGCGCGTGGCCGAT
ATCCTGCCGCTTGCCGAGCACTTCCTTGCGAATGCATCGGCCGATACCGCGCGCAAACATCTTTCTGCCGATGCGCAGCG
CCTGCTCGCCACCTTCGCCTGGCCCGGCAACGTCCGGGAGTTGGCCAATGCGATCGAGCGGGCGAGCGCGCTTGCGCCGG
CCCAGGTGCTCACGCGTGACGATTTCGCCTTTCTGTCAGCGACACGCGACAGCGCGGATGACCCGATTCCCCCGGCGCTG
CTCGAGCTTCCGCTGCCGCAAGCGGTGGCGCAACTGGAGCGCGCGCTGATTGTTCATGCGCTGTCGGCATCGGGCGGCAA
TCGCGCCGAGGCGGCGCGGCGGCTCGGCATCAGCCGCCAGTCGCTCTACACGCGCATGGCGTCGCTGGGCATGTCCGACG
CCTCCGTCTGA

Protein sequence : 
MATILIIDDDDAFREGLAETVQDLGYSPSEARSGDDAFEQLRGGPAPDCIFLDFRLPGADGLAVLETLRKTPGLQSVPVV
MLTAHATSDNTIGAMRLGAFEHLTKPVGRDEIAALLKRILSAQADAPAARVFPDEARSDEPQLLGVSETMREVQKRLGRA
AGGDSTVLITGETGTGKEIAARVLHRASARASGPFVAVNCAAIPDDLLESELFGHGKGAFTGAQGDRRGRVEEAHGGTLF
LDEVGDMSLPMQAKLLRVLQERQVTPLGTNRIVTVDVRVVAATHRDLASMVAAGTFRQDLLFRLNVIPLHMPPLRERVAD
ILPLAEHFLANASADTARKHLSADAQRLLATFAWPGNVRELANAIERASALAPAQVLTRDDFAFLSATRDSADDPIPPAL
LELPLPQAVAQLERALIVHALSASGGNRAEAARRLGISRQSLYTRMASLGMSDASV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-64 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-64 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_3810 YP_004230281.1 two component sigma-54 specific transcriptional regulator BAC0089 Protein 4e-64 43
BC1001_3810 YP_004230281.1 two component sigma-54 specific transcriptional regulator BAC0467 Protein 2e-71 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_3810 YP_004230281.1 two component sigma-54 specific transcriptional regulator VFG1249 Protein 6e-60 43
BC1001_3810 YP_004230281.1 two component sigma-54 specific transcriptional regulator VFG0116 Protein 4e-64 42
BC1001_3810 YP_004230281.1 two component sigma-54 specific transcriptional regulator VFG1214 Protein 2e-68 41