Gene Information

Name : BC1001_2944 (BC1001_2944)
Accession : YP_004229418.1
Strain :
Genome accession: NC_015136
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3351537 - 3352340 bp
Length : 804 bp
Strand : +
Note : KEGG: bgf:BC1003_2882 winged helix family two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing prot

DNA sequence : 
ATGCGAATTCTGATTGCCGAAGACGACAGCATACTCGCGGACGGTCTGGTTCGATCACTCCGCCAATCGGCCTATGCCGT
GGATCACGTGAAGAACGGCGTCGAGGCCGACACCGCGCTGTCGATGCAAAGTTTCGATCTGCTGATTCTCGATCTCGGCC
TGCCGCGCATGTCCGGGCTCGAGGTGCTGCGCCGCCTGCGCGCCCGCAATTCCAATCTGCCCGTGCTGATCCTGACGGCC
GCCGACAGCGTCGACGAGCGCGTCAAGGGCCTCGATCTCGGCGCCGACGACTACATGGCCAAGCCGTTCGCCCTGAACGA
ACTGGAAGCGCGCGTGCGCGCGCTGACGCGGCGCGGCGCTGGCGGCGGCCCGACCGTCGTGCGGCACGGTTCGCTGTCCT
TCGATCAGGTGGGCCGGATCGCCTATATCAACGATCAGGTGATCGACCTGTCGGCGCGCGAGCTCGGCCTGCTCGAAGTG
CTGCTGCAGCGGATCGGCCGGCTGGTGTCGAAAGAACAGCTGGTCGACCATCTGTGCGAATGGGGCGAGGAAGTCAGCAA
CAACGCAATCGAGGTGTATGTGCACCGGCTGCGCAAGAAAATCGAGCCGAGCGGCGTGCGTATCATCACCGTGCGTGGAC
TCGGCTACTGCCTCGAAAAGGCGGTCGCAGCCGCGAACGCCAATCCGGGCGGCAATGCGGGCCATGCAGGCACCCCTGAC
ACGGCCGCCGCCCCTGAGCCGGCGCCGTCGCCCTCGTCGCCGGCACCGTCCGGCGGAATGCCGGCAAGCCATCACTATAA
GTAG

Protein sequence : 
MRILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRMSGLEVLRRLRARNSNLPVLILTA
ADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGAGGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEV
LLQRIGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEPSGVRIITVRGLGYCLEKAVAAANANPGGNAGHAGTPD
TAAAPEPAPSPSSPAPSGGMPASHHYK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-39 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_2944 YP_004229418.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-29 45
BC1001_2944 YP_004229418.1 winged helix family two component transcriptional regulator BAC0487 Protein 2e-36 44
BC1001_2944 YP_004229418.1 winged helix family two component transcriptional regulator BAC0083 Protein 8e-36 44
BC1001_2944 YP_004229418.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 2e-31 42
BC1001_2944 YP_004229418.1 winged helix family two component transcriptional regulator BAC0347 Protein 6e-33 41
BC1001_2944 YP_004229418.1 winged helix family two component transcriptional regulator BAC0308 Protein 6e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_2944 YP_004229418.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-35 44
BC1001_2944 YP_004229418.1 winged helix family two component transcriptional regulator VFG0473 Protein 3e-40 44