Gene Information

Name : BC1001_1956 (BC1001_1956)
Accession : YP_004228445.1
Strain :
Genome accession: NC_015136
Putative virulence/resistance : Virulence
Product : lytic transglycosylase catalytic subunit
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 2238003 - 2238521 bp
Length : 519 bp
Strand : +
Note : PFAM: Lytic transglycosylase catalytic; KEGG: bge:BC1002_6986 lytic transglycosylase catalytic

DNA sequence : 
GTGAAGCGTGTCCCGATGATGCCCCTGTGTGCATTGCTCGTTGCCGCGACGAGCCGCGCCGACTGCCTCGACGATGCCGC
GCGGTTTCATCACGTCAATGTCCGCCTGGTCCGCGCGATCGCCACTGTCGAATCGGGACAGCACGCCAGCGTCGTCCATC
TGAATGATGACGGCACCACCGACATCGGGCTCATGCAGATCAACAGCCGCTGGCTCACGACACTTTCGCGCTTCGGTGTC
TCGCGTGCAGGCCTCCATGATGGCTGCACCAATGCCTATGTCGGCGCCTGGATCCTGTCGCAGAACATCCATCACCTCGG
GCTCACGTGGGATGCGATCGGCGCGTACAACGCGGGCACACATGAAAAGCGCATCGCCTATGCGCGCCGCGTCTACCGCG
AACTGCACGCCGCCCCGCCATCCATGGCCCAGCAACCGCCGCCCGTAACGGCCCGTCCTTCCGGTTCGAGCTTCATTGCC
CGGCTTTTTGAGCCCATCGGATGGGGGAACGGGCAATGA

Protein sequence : 
MKRVPMMPLCALLVAATSRADCLDDAARFHHVNVRLVRAIATVESGQHASVVHLNDDGTTDIGLMQINSRWLTTLSRFGV
SRAGLHDGCTNAYVGAWILSQNIHHLGLTWDAIGAYNAGTHEKRIAYARRVYRELHAAPPSMAQQPPPVTARPSGSSFIA
RLFEPIGWGNGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 5e-14 41
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 4e-14 41
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 2e-14 41
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 2e-14 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_1956 YP_004228445.1 lytic transglycosylase catalytic subunit VFG0539 Protein 1e-14 41