Gene Information

Name : BC1001_1619 (BC1001_1619)
Accession : YP_004228114.1
Strain :
Genome accession: NC_015136
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1854346 - 1855020 bp
Length : 675 bp
Strand : +
Note : KEGG: bmj:BMULJ_05659 OmpR family two-component system response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
GTGCGCATACTACTTGTCGAAGACGACCCGCTGCTCGGCGACGGCATTCGTGCCGGGCTGCGGCAGCAAGGATTTCAGGT
CGATTGGGTTCAGGATGGCGAGGCCGCGCAGCGGGAGCTGCGTGCGCAGCCGTACGCAGCTGCAGTGCTCGATCTCGGCT
TGCCGCGCATGGATGGTATCGATGTGCTGCGAAGCGTACGCCGCGTCGGCGTCGATTTTCCGATCCTGGTGCTGACGGCG
CGCGACGCCGTGCCTGACCGCGTTCGCGGGCTCGACATGGGGGCCGACGACTATGTCGTCAAACCTGTCGATCTCGAGGA
ACTCGGGGCCCGATTGCGAGCATTGGTGCGCCGTGCGCACGGCCGGCCGCGCGAACGGCTCGAGGCGCACGATGTCGTCC
TCGATCCGGCGTCCCGCATGGTGTACCGCGCTGGCGTGCCGGTAACGCTTTCCAGTCGGGAGTTCGATCTGCTGCACGTG
TTGATGTTGAACGCCGGCCGCGTGCTGTCGCGCGAGCAGATCGAGCAACACCTCTACAGCTGGGGCCAGGAGGTCGAAAG
CAATGCGGTGGAGGTCCATGTGCATCGCCTGAGGAGCAAGCTCGGCAGCGACGTGATCCGGACGGTTCGCGGCATCGGCT
ACGTGCTGCTGGGCAAACCGGCGGCCGCGTCATGA

Protein sequence : 
MRILLVEDDPLLGDGIRAGLRQQGFQVDWVQDGEAAQRELRAQPYAAAVLDLGLPRMDGIDVLRSVRRVGVDFPILVLTA
RDAVPDRVRGLDMGADDYVVKPVDLEELGARLRALVRRAHGRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHV
LMLNAGRVLSREQIEQHLYSWGQEVESNAVEVHVHRLRSKLGSDVIRTVRGIGYVLLGKPAAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-34 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_1619 YP_004228114.1 winged helix family two component transcriptional regulator BAC0197 Protein 5e-31 44
BC1001_1619 YP_004228114.1 winged helix family two component transcriptional regulator BAC0487 Protein 2e-32 44
BC1001_1619 YP_004228114.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 2e-25 43
BC1001_1619 YP_004228114.1 winged helix family two component transcriptional regulator BAC0125 Protein 9e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_1619 YP_004228114.1 winged helix family two component transcriptional regulator VFG0473 Protein 5e-37 44
BC1001_1619 YP_004228114.1 winged helix family two component transcriptional regulator VFG1390 Protein 8e-28 42
BC1001_1619 YP_004228114.1 winged helix family two component transcriptional regulator VFG1386 Protein 6e-27 42