Gene Information

Name : BC1001_1564 (BC1001_1564)
Accession : YP_004228060.1
Strain :
Genome accession: NC_015136
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1787730 - 1788389 bp
Length : 660 bp
Strand : -
Note : KEGG: bgf:BC1003_1745 winged helix family two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing prot

DNA sequence : 
ATGCGTGTACTCCTCGTAGAAGACGACGACCTGATCGGCTGCGGAATCGAAGCCGGTCTGCGCCAGGCAGGCTTCACGGT
CGACTGGGCGCGCGACGGCCACAAGGCCGGCCTCGCGCTCGACACCACGAGCTATGCGCTCGTCGTGCTCGATCTCGGCC
TGCCGCGCGTATCCGGCATGGAACTGCTCAGGCGCTTGCGCGACGCCGGCAAGGACGTGCCGGTGCTGGTCCTGACTGCG
CGCGGCACGGTGGTGGATCGCGTCGGCGGCCTCGAAGCGGGTGCCGACGACTACCTCGGCAAGCCGTTCGACCTGACGGA
GCTGATTGCGCGCTGCCGCGCGCTGCTGCGACGCGCGCAAGGCCGCAGCGTCGATGTGATCCGCTATCGCGAGCTCTCGG
TGAATCCGGCCGCGCAAGCCGTCGAGGTGGCGGGCAAGCGCGTGTCGCTCACGTCGCGCGAATGGGCGATCCTCATGCAG
TTGCTGACCAATCAGGGCATTCCGCAATCGCGCTCGCGTCTGGAGGAAAGCCTGTACGGCTGGCAGGAAGAAATCGAAAG
CAATGCCATCGAGGTGCATGTGTCGAACCTGCGCAAGAAGCTCGGCGCGCACCTTATCCGGACCGTGCGCAATATCGGCT
ACGTGGTGGAGAAAGAATGA

Protein sequence : 
MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTSYALVVLDLGLPRVSGMELLRRLRDAGKDVPVLVLTA
RGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQGRSVDVIRYRELSVNPAAQAVEVAGKRVSLTSREWAILMQ
LLTNQGIPQSRSRLEESLYGWQEEIESNAIEVHVSNLRKKLGAHLIRTVRNIGYVVEKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-32 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator BAC0347 Protein 9e-27 45
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator BAC0487 Protein 3e-34 45
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator BAC0111 Protein 4e-26 42
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 2e-22 42
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator BAC0083 Protein 4e-25 41
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator BAC0308 Protein 5e-25 41
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator BAC0638 Protein 3e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-28 42
BC1001_1564 YP_004228060.1 winged helix family two component transcriptional regulator VFG0473 Protein 7e-32 42