|
Name : clpC (MTES_1062) Accession : YP_004223906.1 Strain : Microbacterium testaceum StLB037 Genome accession: NC_015125 Putative virulence/resistance : Virulence Product : ATPase with chaperone activity, ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1120496 - 1123021 bp Length : 2526 bp Strand : - Note : - DNA sequence : ATGTTCGAGAGATTCACCGACCGTGCCCGTCGTGTGGTCGTCCTCGCCCAAGAAGAGGCGAAGATGCTCAACCACAACTA CATCGGCACCGAGCACATCCTGCTCGGGCTGATCCACGAGGGCGAGGGTGTCGCTGCGAAGGCGCTCGAGTCGCTCGGCA TCTCGCTCGACGCCGTGCGCGAGCAGGTGCAGGACATCATCGGCCAGGGTCAGCAGCAGCCGACCGGCCACATCCCCTTC ACGCCGCGCGCGAAGAAGGTGCTCGAGCTGTCGCTGCGCGAAGCGCTGCAGCTCGGCCACAACTACATCGGCACGGAGCA CATCCTCCTCGGCCTCATCCGCGAGGGTGAGGGCGTCGCGGCCCAGGTGCTCGTGAAGCTCGGCGCCGACCTCAACAAGG TGCGCCAGCAGGTCATCCAGCTGCTCTCGGGCTACCAGGGCAAGGAGCCCGCGGGCGTGGCATCCGGTGCCGGCGAGCAG AGCCAGGGAGCCGCCCAGGGCGGGTCGGCCGTGCTCGACCAGTTCGGCCGCAACCTCACGCAGGCCGCGCGCGACAACAA GCTCGACCCCGTCATCGGGCGCGAGAAGGAGATCGAGCGCGTGATGCAGATCCTGTCGCGCCGCTCCAAGAACAACCCCG TCCTCATCGGCGAGCCCGGTGTCGGAAAGACGGCGGTCGTCGAGGGCCTCGCGCAGGCCATCGTCAAGGGCGACGTGCCC GAGACGCTCAAGGACAAGCAGGTCTACTCGCTCGACCTCGGCTCGCTCATCGCCGGTTCCCGCTACCGCGGTGACTTCGA GGAGCGACTGAAGAAGGTCACCAAGGAGATCCGCACCCGCGGCGACATCATCGTCTTCATCGACGAGATCCACACCCTCG TGGGTGCCGGTGCCGCCGAGGGTGCGATCGACGCGGCATCCATCCTCAAGCCCCTCCTCGCGCGCGGTGAGCTCCAGACG ATCGGCGCCACCACGCTGGACGAGTACCGCAAGCACTTCGAGAAGGATGCCGCTCTCGAGCGCCGCTTCCAGCCGATCCA GGTGGCCGAGCCGAGCCTGCCCCACGCGATCAACATCCTGAAGGGGCTGCGCGACCGCTACGAGGCGCACCACAAGGTGC AGATCACCGACGGTGCGATCGTGGCCGCGGCGAACCTCGCCGACCGTTACATCAGCGACCGGTTCCTGCCCGACAAGGCC ATCGACCTGATCGACGAGGCCGGCGCCCGCCTGCGCCTGTCGATCCTGTCGTCGCCGCCGGAGCTGCGCGAGTTCGACGA GAAGATCGCCAAGGTCCGCGAGCAGAAGGAGCAGGCCTCCGAGGAGCAGGACTTCGAGAAGGCGGCATCCCTGCGCGACG AGGAGAAGTCGCTCCTCGCCGAGCGTCTCCGCCTCGAGAAGCAGTGGCGCTCGGGCGACGTCGCCTCCCACGCGGTGGTC GACGAGGGCCTGATCGCCGAGGTGCTCGCCCAGGCGACCGGCATCCCGGTGTTCAAGCTCACCGAGGAGGAGTCCAGCCG CCTCATGTTCATGGAGAAGACCCTGCACCAGCGGGTCATCGGCCAGGAAGAGGCGATCGCGGCCCTCTCGCGCACGATCC GTCGCCAGCGCGCGGGCCTCAAGGACCCCAAGCGCCCCTCCGGCTCGTTCATCTTCGCCGGCCCGACCGGTGTCGGAAAG ACCGAGCTCGCCAAGGCGCTCGCCGAGTTCCTCTTCGATGACGAGGGCGCGCTGATCTCCCTCGACATGTCGGAGTTCGG TGAGAAGCACACCGTCTCGCGTCTGTTCGGTGCCCCTCCCGGATTCGTCGGGTTCGAAGAGGGCGGCCAGCTCACCGAGA AGGTGCGCCGCAAGCCGTTCTCGGTCGTGCTCTTCGACGAGATCGAGAAGGCCCACCCCGACATCTTCAACTCGTTGCTG CAGATCCTCGAAGAGGGACGCCTGACCGACGGTCAGGGCCGCGTCATCGACTTCAAGAACACCGTCATCATCATGACCAC GAACCTCGGTTCGTCGGCCATCGCCGGTGGTCCGGTCGGCTTCCAGGTCGAGGGCAGTGCGCAGACCTCGTACGAGCGGA TGAAGGGCAAGGTCGACGAGGAGCTCAAGCGCCACTTCAAGCCCGAGTTCCTCAACCGCGTCGACGACGTCATCGTCTTC CCGCAGCTGAACAAGGACGAGCTCCGTCAGATCGTCGGCCTGTTCGTGAAGCGCCTGGCCGATCGCCTGCTCGACCGCGA CATGACCGTCGAGCTGTCGGACGACGCCAAGGACAAGCTCATCGAGATCGGGTTCGACCCGACGCTCGGTGCCCGTCCCC TGCGCCGTGCCATGCAGCGCGAGGTCGAGGACCGTCTCAGCGAGAAGATCCTGCACGGCGAGCTCGAGTCGGGCGACCAC GTCAAGGTCGGCGTCGAGAACGGTCAGTTCTCGTTCGAGACCAGCCCCCGTGGCGAGAAGGTCGCGATCGGTGTCGGAAC GGCCGGCGAGATCGCCGCGACCCCCGACACGCTCGCGGGCAGCTGA Protein sequence : MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVREQVQDIIGQGQQQPTGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLSGYQGKEPAGVASGAGEQ SQGAAQGGSAVLDQFGRNLTQAARDNKLDPVIGREKEIERVMQILSRRSKNNPVLIGEPGVGKTAVVEGLAQAIVKGDVP ETLKDKQVYSLDLGSLIAGSRYRGDFEERLKKVTKEIRTRGDIIVFIDEIHTLVGAGAAEGAIDAASILKPLLARGELQT IGATTLDEYRKHFEKDAALERRFQPIQVAEPSLPHAINILKGLRDRYEAHHKVQITDGAIVAAANLADRYISDRFLPDKA IDLIDEAGARLRLSILSSPPELREFDEKIAKVREQKEQASEEQDFEKAASLRDEEKSLLAERLRLEKQWRSGDVASHAVV DEGLIAEVLAQATGIPVFKLTEEESSRLMFMEKTLHQRVIGQEEAIAALSRTIRRQRAGLKDPKRPSGSFIFAGPTGVGK TELAKALAEFLFDDEGALISLDMSEFGEKHTVSRLFGAPPGFVGFEEGGQLTEKVRRKPFSVVLFDEIEKAHPDIFNSLL QILEEGRLTDGQGRVIDFKNTVIIMTTNLGSSAIAGGPVGFQVEGSAQTSYERMKGKVDEELKRHFKPEFLNRVDDVIVF PQLNKDELRQIVGLFVKRLADRLLDRDMTVELSDDAKDKLIEIGFDPTLGARPLRRAMQREVEDRLSEKILHGELESGDH VKVGVENGQFSFETSPRGEKVAIGVGTAGEIAATPDTLAGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004223906.1 | ATPase with chaperone activity, ATP-binding subunit | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_004223906.1 | ATPase with chaperone activity, ATP-binding subunit | VFG0080 | Protein | 2e-156 | 53 |
| clpC | YP_004223906.1 | ATPase with chaperone activity, ATP-binding subunit | VFG2084 | Protein | 2e-95 | 43 |
