Gene Information

Name : Rahaq_4947 (Rahaq_4947)
Accession : YP_004215649.1
Strain :
Genome accession: NC_015062
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 536271 - 537125 bp
Length : 855 bp
Strand : +
Note : PFAM: ABC transporter; KEGG: ddd:Dda3937_00373 manganese ABC transporter inner membrane permease SitD

DNA sequence : 
ATGATGTCCTGGTTTGATGTGCTGATGGAGCCGCTGAGCTTCGATTTTATGCAACGTGCTCTGCTGACCGCTGCGGCCAC
CAGTATCGTCTGCGCAATGTTTTCCTGTTTTCTGGTACTCAAAGGCTGGTCGCTGATGGGGGACGCCATTTCTCATGCGG
TCCTTCCGGGCGTAGTGCTGGCCTATCTGGCAGGAATTCCGCTGGTGATTGGCGCGTTCGGTTCCGGCCTGTTTTGCGCG
GTCGCGACGGGTTTCATCAAAGAACATTGCCGGGTGAAAGAAGATTCGGTAATGGGGATCGTCTTCTCCGGTATGTTTGC
CGGTGGTCTGGTGCTGTTCTCGCGGGTGAATACCGAGCAGCATCTCAGCCACATTTTGTTTGGTAACGTGCTGGGTGTGA
CCGACAGTGAAATGTTGCAAACCCTGATTATCGCCGCTGTCGTGACGCTGGCGATTATCCTCAAATTTAAAGACCTGATG
CTGTTTTGTTTTGATCCTGTACAGGCGAAAGTCATCGGGCTGCCGGTACGTTTTTATCACTATGCGTTGTTGTGTATGCT
GGCACTGACCATTGTCGCAGCGTTACAGGCTGTCGGTGTGGTGCTGGTGGTGGCGATGCTGATTACGCCGGGCATTACGG
CGTTTCTGCTGTGTAAGACGTTGACGAAGATGCTGGTGGTTTCCGTGACAACGTCACTTTTTGCGGCCATCTCAGGCACT
TTTATCAGCTTCTATATTGATGCTGCGACCGGGCCGACAATCGTTCTGGTGCAGGCGGCCATTTTCCTGCTGGCGCTGAC
GGCGAATTTACTGCGCAAATCGATTAAGCCGCGTCAGGCCGCAGCGAATACTTAG

Protein sequence : 
MMSWFDVLMEPLSFDFMQRALLTAAATSIVCAMFSCFLVLKGWSLMGDAISHAVLPGVVLAYLAGIPLVIGAFGSGLFCA
VATGFIKEHCRVKEDSVMGIVFSGMFAGGLVLFSRVNTEQHLSHILFGNVLGVTDSEMLQTLIIAAVVTLAIILKFKDLM
LFCFDPVQAKVIGLPVRFYHYALLCMLALTIVAALQAVGVVLVVAMLITPGITAFLLCKTLTKMLVVSVTTSLFAAISGT
FISFYIDAATGPTIVLVQAAIFLLALTANLLRKSIKPRQAAANT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-61 55
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-61 55
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-61 55
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-61 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-61 54
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 3e-40 42
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-40 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4947 YP_004215649.1 ABC transporter BAC0442 Protein 2e-73 65
Rahaq_4947 YP_004215649.1 ABC transporter BAC0352 Protein 1e-61 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4947 YP_004215649.1 ABC transporter VFG0528 Protein 1e-61 55