Gene Information

Name : Rahaq_4946 (Rahaq_4946)
Accession : YP_004215648.1
Strain :
Genome accession: NC_015062
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 535420 - 536274 bp
Length : 855 bp
Strand : +
Note : PFAM: ABC transporter; KEGG: ypb:YPTS_2423 ABC transporter

DNA sequence : 
ATGACCGAACTGTTGCTGGAGCCGTTTCAGTACAACTATATGGTGAAAGCCATCTGGGTGAGTGCGGGGGTCGGTGCTGT
GTGTGCATTTTTATCGGCGTATCTGATGCTCAAAGGCTGGTCACTGATGGGCGATGCGTTGTCGCATTCGGTAGTGCCCG
GTGTCGCGGGCGCTTACGCGCTGGGCTTTCCCTACGCGATCGGCGCATTCGGGACCGGTATTCTGGCCGCACTTTGCATG
ACACTGTTGCGTCACTTCACCAAACTGCGGGAAGACGCGATTATCGGTTTCGTGTTCTCCACGTTCTTTGCCCTTGGCCT
GTTACTGGTATCGCTTAACCCGACATCCGTTAACGTGCAGTCGATTCTGTTCGGCAATATTTTAGGGATTGATGACGCCG
ATATTTTACAGGTACAAATTATTGTCGGCGTTTCGCTGCTGGTGCTGTGTCTTATCTGGCGTGACCTGCTGGCGGTATTT
TTCGACGAAGCGCATGCGGTTTCGGTCGGCCTTTCGCCGCTGTGGCTGAAAGTGATTTTCTTCACTATTTTCAGCGCGTG
CAGCGTAGCGGCGTTACAAACTGTCGGCGCAATTTTAGTGATCGCAATGGTCATCACACCCGGCGCAACGGCCTATCTGC
TGTCAGACCGTTTTTCACACCTGCTCATTATTTCTGTGATCATCGGTGCAGTGACCAGTGCAGCGGGGGCATGGCTGAGT
TATTTCCTCGATGGTGCAACCGGCGGGGTGATTGTTTGTCTGCAAACCACCGTCTTCCTGCTGGCGTTCTTGTTCGCGCC
GAAACATGGCTGGCTGGTGAATCATTTCCGCATTAAAAACCGGAGCCGCGCATGA

Protein sequence : 
MTELLLEPFQYNYMVKAIWVSAGVGAVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGFPYAIGAFGTGILAALCM
TLLRHFTKLREDAIIGFVFSTFFALGLLLVSLNPTSVNVQSILFGNILGIDDADILQVQIIVGVSLLVLCLIWRDLLAVF
FDEAHAVSVGLSPLWLKVIFFTIFSACSVAALQTVGAILVIAMVITPGATAYLLSDRFSHLLIISVIIGAVTSAAGAWLS
YFLDGATGGVIVCLQTTVFLLAFLFAPKHGWLVNHFRIKNRSRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-75 62
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-75 62
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-75 62
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-75 62
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-75 62
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-44 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-44 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-43 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-43 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-43 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4946 YP_004215648.1 ABC transporter BAC0441 Protein 1e-100 79
Rahaq_4946 YP_004215648.1 ABC transporter BAC0351 Protein 8e-76 62
Rahaq_4946 YP_004215648.1 ABC transporter BAC0352 Protein 4e-44 43
Rahaq_4946 YP_004215648.1 ABC transporter BAC0442 Protein 4e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4946 YP_004215648.1 ABC transporter VFG0527 Protein 8e-76 62
Rahaq_4946 YP_004215648.1 ABC transporter VFG0528 Protein 4e-44 43