Gene Information

Name : Rahaq_4945 (Rahaq_4945)
Accession : YP_004215647.1
Strain :
Genome accession: NC_015062
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 534644 - 535423 bp
Length : 780 bp
Strand : +
Note : KEGG: spe:Spro_2132 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAGTGACACCACGCTGCATCTCAAGGTTGATGATATTTCGGTGACCTACAACAACGGGCATACCGCGATTGAGAATGC
CTCGTTCACGCTGCACGGCGGCTCGATTTGCGCACTGCTGGGCGTGAACGGCAGCGGTAAATCCACGCTGTTTAAAACCA
TTATGGGGATTATCCGTCCGACGCACGGGCGGGTGACACTTGATGGCCTCAATGTCGCCAAAGCACTGAAACAAAATCTG
ATCGCGTATGTGCCGCAGTCGGAAGAGGTGGACTGGAATTTCCCGGTGCTGGTGCGGGATGTGGTGATGATGGGGCGCTA
TGGCAAAATGTCGTTTCTGCGCATTCCCTCACAGGAAGATAAAAAACAAGTTGCTTCCGCGCTGGCGCGTGTTGGGCTGA
CGGAGCTGGCCCACCGCCAGATTGGAGAGCTTTCCGGCGGTCAGAAAAAACGCGTTTTCCTGGCGCGTGCGCTGGCACAA
CAAGGGCGGGTGATGTTGCTTGATGAGCCGTTTACCGGCGTGGATATCAAAACTGAAAACGCCATTATCGAATTGCTGCG
ACAACTGCGCGAGGAAGGACATCTGATTCTGGTGTCGACGCACAACATCGCCAGCGTGCCCGATTTTTGTGATCGCGTGG
TGCTGATTAACCGCACGGTGATGGCTTCCGGTCCGCTGGAAACCACCTTTACCCATCAGAATCTTGAAAATACCTTTGGC
GGTGCGCTGCGTAATATCGGCTATCTGGTGCCACAAGAACCGGTGAGGCGGGCGGTATGA

Protein sequence : 
MSDTTLHLKVDDISVTYNNGHTAIENASFTLHGGSICALLGVNGSGKSTLFKTIMGIIRPTHGRVTLDGLNVAKALKQNL
IAYVPQSEEVDWNFPVLVRDVVMMGRYGKMSFLRIPSQEDKKQVASALARVGLTELAHRQIGELSGGQKKRVFLARALAQ
QGRVMLLDEPFTGVDIKTENAIIELLRQLREEGHLILVSTHNIASVPDFCDRVVLINRTVMASGPLETTFTHQNLENTFG
GALRNIGYLVPQEPVRRAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-74 64
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-74 64
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-75 64
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-75 64
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 9e-76 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4945 YP_004215647.1 ABC transporter BAC0440 Protein 3e-89 74
Rahaq_4945 YP_004215647.1 ABC transporter BAC0350 Protein 6e-76 64
Rahaq_4945 YP_004215647.1 ABC transporter BAC0400 Protein 2e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4945 YP_004215647.1 ABC transporter VFG0526 Protein 5e-76 64