Gene Information

Name : Rahaq_4944 (Rahaq_4944)
Accession : YP_004215646.1
Strain :
Genome accession: NC_015062
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 533706 - 534647 bp
Length : 942 bp
Strand : +
Note : PFAM: periplasmic solute binding protein; KEGG: spe:Spro_2133 periplasmic solute binding protein

DNA sequence : 
ATGGAAAAAGGACAAAGCATTTTAAAATTATTCAGCTATTCGCCGTTTCGTTTGCGACTGATGCTGGTCGGGATGATCGT
GGCGCTGATCACCGGAAACGCGCAGGCGGCCGAAAAAGACAAAAAGAAGTTTAAAGTCGTCACCACTTTCACAGTGATCC
AGGATATCGCGCAGAACGTTGCCGGTGATGCGGCGACGGTAGAATCCATCACCAAACCCGGCGCAGAAATTCATGATTAC
CAGCCGACGCCGCGTGACATCGTGAAAACCCAGTCGGCGGATCTCATTTTGTGGAACGGTTTTAACCTTGAACGCTGGTT
TGGTCGTTTTTTTGCCAACATCAGGAATGTGCCTTCTGCGACAGTGACGGACGGCATCGCGCCTCTGCCTATTCAGGAAG
GACCGTATGTCGGCAATCCAAACCCTCATGCCTGGATGTCCGCGAAAAATGCGCTGGTTTACATCGAAAATATCCGCGCC
GCGCTGGTGAAATATGACCCTGAAAACGCCGCCGTTTATGACCGCAATGCTAAAAATTATGCCGAAAAAATCAGCCTGCT
CGATGCGCCGTTGCGTGAGCGTCTGGCGAAAATCCCGGAAGGACAGCGCTGGCTGGTGACCAGCGAAGGCGCGTTCAGTT
ATCTGGCGAAAGATTATGGATTGAAAGAAGCCTACCTGTGGCCGATCAATGCTGAAGAACAGGGTACGCCGCAGCAGGTG
AAAAAAATCATCGATCTGGTGCGTCAGCAAAATATCCCGGTGGTATTCAGCGAAAGCACAATCTCGGACAAACCGGCGAA
GCAGGTCAGTAAAGAGACGGGCGCGAAATATGGCGGCGTGTTGTATGTCGATTCACTGTCTGCCGCTGACGGGCCGGTGC
CGACTTACATTGATTTGCTGAAAGTCACGGTGAGTACCATCGCAGAAGGGTTCGGACAATGA

Protein sequence : 
MEKGQSILKLFSYSPFRLRLMLVGMIVALITGNAQAAEKDKKKFKVVTTFTVIQDIAQNVAGDAATVESITKPGAEIHDY
QPTPRDIVKTQSADLILWNGFNLERWFGRFFANIRNVPSATVTDGIAPLPIQEGPYVGNPNPHAWMSAKNALVYIENIRA
ALVKYDPENAAVYDRNAKNYAEKISLLDAPLRERLAKIPEGQRWLVTSEGAFSYLAKDYGLKEAYLWPINAEEQGTPQQV
KKIIDLVRQQNIPVVFSESTISDKPAKQVSKETGAKYGGVLYVDSLSAADGPVPTYIDLLKVTVSTIAEGFGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-87 64
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-88 64
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-87 64
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-87 64
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-87 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4944 YP_004215646.1 periplasmic solute binding protein BAC0439 Protein 5e-100 78
Rahaq_4944 YP_004215646.1 periplasmic solute binding protein BAC0349 Protein 7e-88 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4944 YP_004215646.1 periplasmic solute binding protein VFG0525 Protein 6e-88 64