Gene Information

Name : Rahaq_4841 (Rahaq_4841)
Accession : YP_004215547.1
Strain :
Genome accession: NC_015062
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 420191 - 420913 bp
Length : 723 bp
Strand : +
Note : KEGG: spe:Spro_1508 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence :
ATGGATAAGACGAAGAAGATCCTGATCGTTGAAGATGACGGGGATATCGCAGAACTGCTCAGCCTGCATCTGCGTGATGA
AGGTTATGAGATTACCCACGCCGCCGACGGCAATCTGGGGGTGGCACATCTGGAGAAGGGCGGCTGGGACGCGCTGATCC
TCGATCTGATGCTGCCGGGCGTTGATGGTCTGGAAATCTGCCGCCGTGCGCGCAATATGACGCGGTATACGCCGATCATT
ATTATCAGCGCGCGTTCCAGCGAAGTACATCGCGTGCTCGGGCTGGAACTGGGCGCGGACGATTATCTGGCGAAACCGTT
CTCTATGCTGGAACTGGTGGCGCGGGTCAAGGCGCTGTTCCGGCGGCAGGAAGCGATGAGCCGTAATCTGAAAATGGATG
CCGGAACGCTGAGCTTTTCCGGGCTGGTGATCGACCCGATTGCGCGTGACGTGATGCTCAATCATCAGTCTGTCGAGCTG
ACGCCCCGCGAGTTTGACCTGTTGTATTTCTTTGCCAAAAATCCCGGCAAAGTATTCTCGCGACTCAGCCTGTTAAATCA
GGTCTGGGGCTATGAACACGAAGGGTATGAACATACGGTGAACACCCATATCAACCGGCTGCGCATCAAGATAGAAACCA
ATCCGGCCGAGCCGGAACGGATTCTGACCGTGTGGGGAAAAGGCTATAAATTCGTGTCCTCTTCTGAGGCGTCACAAGGG
TAA

Protein sequence :
MDKTKKILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLMLPGVDGLEICRRARNMTRYTPII
IISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEAMSRNLKMDAGTLSFSGLVIDPIARDVMLNHQSVEL
TPREFDLLYFFAKNPGKVFSRLSLLNQVWGYEHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGKGYKFVSSSEASQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-76 65
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-76 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 7e-41 44
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 1e-31 43
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 8e-36 43
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 3e-37 43
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 1e-34 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 1e-34 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 1e-34 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 1e-34 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 1e-34 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 1e-34 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 1e-34 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 1e-34 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator AF155139.2.orf0.gene Protein 7e-43 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 4e-41 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 1e-43 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 6e-40 42
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 2e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 3e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 2e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 3e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 3e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 3e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 2e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 3e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 3e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 3e-41 41
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator FJ349556.1.orf0.gene Protein 3e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator VFG1563 Protein 3e-76 65
Rahaq_4841 YP_004215547.1 winged helix family two component transcriptional regulator VFG1702 Protein 2e-76 65