Gene Information

Name : Rahaq_4678 (Rahaq_4678)
Accession : YP_004215385.1
Strain :
Genome accession: NC_015062
Putative virulence/resistance : Virulence
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 238299 - 238634 bp
Length : 336 bp
Strand : -
Note : PFAM: small multidrug resistance protein; KEGG: eta:ETA_34040 DMT superfamily multiple drug (quaternary ammonium compounds) efflux pump

DNA sequence : 
ATGTTCAAAATATATCTCATCCTTGCTGTTTCTATCTGCGCTGAAACACTGGCGACGACCATGATGAAGGCGTCTGATGG
ATTCACCCGGTTAGTGCCGAGCGTCATTGTGGTCGTCGGTTATGCCATATCCTTTTATGGACTTTCTCAGGTCGTTAAAG
TGATGAATATCGGCATCGCCTACGCTATCTGGGCAGGCATGGGGATTTTCCTTGTTTCGGCCATGTCATTCTTCATCTAC
AAACAGCGGCTTGATACTCCGGCGCTGATTGGCATGGGCTGCATCGCTGTCGGCATTATGATCATCCAGCTTTATTCTAA
ATCTGTGTCGCATTAA

Protein sequence : 
MFKIYLILAVSICAETLATTMMKASDGFTRLVPSVIVVVGYAISFYGLSQVVKVMNIGIAYAIWAGMGIFLVSAMSFFIY
KQRLDTPALIGMGCIAVGIMIIQLYSKSVSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42068.1 hypothetical protein Not tested PAI II 536 Protein 9e-14 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4678 YP_004215385.1 small multidrug resistance protein CP004022.1.gene1549. Protein 5e-25 61
Rahaq_4678 YP_004215385.1 small multidrug resistance protein BAC0377 Protein 3e-26 57
Rahaq_4678 YP_004215385.1 small multidrug resistance protein BAC0002 Protein 1e-19 53
Rahaq_4678 YP_004215385.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 1e-19 53
Rahaq_4678 YP_004215385.1 small multidrug resistance protein BAC0324 Protein 1e-20 52
Rahaq_4678 YP_004215385.1 small multidrug resistance protein BAC0150 Protein 1e-16 50
Rahaq_4678 YP_004215385.1 small multidrug resistance protein NC_002695.1.913273.p Protein 2e-16 49
Rahaq_4678 YP_004215385.1 small multidrug resistance protein CP001138.1.gene1489. Protein 5e-18 46
Rahaq_4678 YP_004215385.1 small multidrug resistance protein BAC0322 Protein 7e-22 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_4678 YP_004215385.1 small multidrug resistance protein VFG1587 Protein 4e-14 41