Gene Information

Name : Rahaq_0665 (Rahaq_0665)
Accession : YP_004211419.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : RpiR family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1737
EC number : -
Position : 710324 - 711163 bp
Length : 840 bp
Strand : -
Note : PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ent:Ent638_3232 transcriptional regulator

DNA sequence : 
GTGAGTCAGACCAAGGAAACAGGCACGCTGTTACTGCGAATGCGTCAGGGACTGGAGAATTACAGTCCGACGCTGCATAA
GCTGGGCAGTTTTGTGCTGGAACAGCCGCAGCGCGTGCTTTACCTGACCATCACTGAACTGGCGCGTGAGAGTGATACCA
GTGAAGCCAGCGTCACGCGGCTTTGCCGCCAGCTGGGTTGCAAAGGGTTTACCGAGTTTAAGATGGGCCTCGCGCTTGAG
ACGCGACAAAATCCGACATTGCCGTCCGCTGGAGGGAATGACGACGTTCAGACGCTGATCGAAGACAGCATCACTGCCCT
GCGTGATACCGGAAAACTGCTCGATCGGCAGGTGCTGGCGGACGCCGCGTTTCGCATTCATAACGCGCGTTCCGTTCAGG
TGTATGGTGTTGCAGCCAGCGCTATCGTGGCGGATTATCTGGGTTACAAGCTGCTACGTCTGGGCAAAGCGTCGCAATGT
TTCGCTGATATGCACCGCGCGGCGATGAATGCCGTGAGCCTGGATAGTCAGGATATTGTGGTCGTGATTTCCAGCTCAGG
TTCCACTAAAGATGTGTTGCACGCCGCCGCGCTGGCGAAGCGTCAGGGCACCACAGTCATCGGTATCAGCAATACGTTGC
GCAGCCCGCTTTCCTCACTGGCCGATATTTTACTGGTGGCCGCCAAACCCGAAGGTCCGCTGACGGCGGGTTTACTGACG
TCCAAAGTCGGCGGGATGCTGCTGGTGGAATTACTGATCAATCAGCTGTTAACGCACTCTCCGGATTATCTGCAAGCCAG
CGAACACAGCGCGAGTGCCACGCTTTCTTTATTGCTGTAA

Protein sequence : 
MSQTKETGTLLLRMRQGLENYSPTLHKLGSFVLEQPQRVLYLTITELARESDTSEASVTRLCRQLGCKGFTEFKMGLALE
TRQNPTLPSAGGNDDVQTLIEDSITALRDTGKLLDRQVLADAAFRIHNARSVQVYGVAASAIVADYLGYKLLRLGKASQC
FADMHRAAMNAVSLDSQDIVVVISSSGSTKDVLHAAALAKRQGTTVIGISNTLRSPLSSLADILLVAAKPEGPLTAGLLT
SKVGGMLLVELLINQLLTHSPDYLQASEHSASATLSLLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1775 NP_231410.1 hypothetical protein Not tested VPI-2 Protein 5e-46 43
VC0395_A1373 YP_001217316.1 hypothetical protein Not tested VPI-2 Protein 5e-46 43
VPI2_0023c ACA01840.1 RpiR family transcriptional regulator Not tested VPI-2 Protein 4e-46 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_0665 YP_004211419.1 RpiR family transcriptional regulator VFG1108 Protein 2e-46 43