Gene Information

Name : Rahaq_0580 (Rahaq_0580)
Accession : YP_004211334.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Unknown
Product : capsid scaffolding
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 623225 - 624076 bp
Length : 852 bp
Strand : +
Note : PFAM: capsid scaffolding; KEGG: yps:YPTB1858 V protein phage 186

DNA sequence :
ATGGCAACAAAAGCAAAGCGCTTTCGCATCTGTACCGAAGGGGCAACCACCGACGGGCGCGAAATCACCCGCGACTGGAT
TGAACAGATGGCGGCGACCTATGACCCGAAGGTCTACGGCGCACGCATCAACATGGAGCACATCAAGGGCTATTTCCCTG
ACAGTGCGTTTCGTATGTACGGCGATGTCACCGGCGTTTACGCCGAAGAAGTGGCTGACGGTGCCCTGAAAGGCAAGCTG
GCACTGTATGCCGATATCGACCCGACGCCTGATTTAGTCTCGATGGTGAAAGCCCGCCAGAAGGTTTACACCTCCATCGA
AGTGAACCCCTCGTTTTCCGACACCGGCAAAGCCTACCTGATCGGCCTGGCCGTGACCGACAGCCCCGCCAGCCTCGGCA
CCGAGTACCTGCAATTCAGCGCGAAGGCGCAGCAAAACCCGCTGGCGAGCCGCAAACAGGACGCCGGAAACCTCTTTACC
GCCGCCGAAGAAACGGCGTTCGAGTTCGTGGAAGAAGCCCCGGCCGCCCCGTCGCTGTTCTCCCGCGTGAAACAACTGCT
TTCCAGCAAATCTGCCTCGGATGATGCCCGCTTCAAAGACGTCCACGACGCCGTGGAAGTGGTGGTGGAGCACGTCGAAA
CCGGCCTGCAAGCCAGTGAAGAAAAGCTGTCCGCGCTGGAAAACACCGTGACACAACGCCTGAACGCGCTGGAGCAAAAC
GCGAAAGATGACCGCGAACAGTTCAGCACGCTGAAAGGCAAGCTGGAGAAGTCCGCGCCGCAGAGCTACACGCAGCGCCC
CGTGTCCAGCGGCGGCGGCAAGGGTGATGCAGCCCATTTCACCGACTGCTAA

Protein sequence :
MATKAKRFRICTEGATTDGREITRDWIEQMAATYDPKVYGARINMEHIKGYFPDSAFRMYGDVTGVYAEEVADGALKGKL
ALYADIDPTPDLVSMVKARQKVYTSIEVNPSFSDTGKAYLIGLAVTDSPASLGTEYLQFSAKAQQNPLASRKQDAGNLFT
AAEETAFEFVEEAPAAPSLFSRVKQLLSSKSASDDARFKDVHDAVEVVVEHVETGLQASEEKLSALENTVTQRLNALEQN
AKDDREQFSTLKGKLEKSAPQSYTQRPVSSGGGKGDAAHFTDC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4626 NP_458708.1 putative capsid protein Not tested SPI-7 Protein 1e-57 52
t4320 NP_807915.1 capsid protein Not tested SPI-7 Protein 1e-57 52
unnamed ABR13465.1 putative capsid scaffold Not tested PAGI-6 Protein 5e-45 49