Gene Information

Name : Rahaq_0551 (Rahaq_0551)
Accession : YP_004211306.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : transport system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4779
EC number : -
Position : 598358 - 599386 bp
Length : 1029 bp
Strand : -
Note : PFAM: transport system permease protein; KEGG: spe:Spro_3425 iron-enterobactin transporter permease

DNA sequence :
ATGAGCCAGACTCTTACAGAACCTCGCCCGCTGAAAAAACCTTTGCTGCTGTCGCGCCCCTTTCTGACCGCCTGCGGACT
GGTGTTATGCCTGATCCTGCTGGCGGTTTACGCGCTGGGTAGCGGAACACTGGCACTGACGCCGTCGCAGGTTGTCAGCG
CCCTGCTCGGCGACGGGCCGAAAAACCTGAGCATTATTGTCACGCAATGGCGTCTGCCGCGCGTGGTGATGGCGATGATT
CTCGGTGCCGCACTCGGCATCAGCGGCGCGATTTTTCAGTCGCTGCTGCGCAATCCATTGGGAAGTCCGGACGTTATCGG
TTTTAACACCGGCGCGTATACCGGCGTTCTGCTGATTATCGTGTTGTTCAATGGCGCTGCGGGCGACCTTCTCCCCGGCG
CGATGGCAGGCGGCGTCGTGACCGCATTGGTGGTATACGCCCTGGCATGGCGTCAGGGCATCGAAACGTTCCGCCTGATT
ATCGTCGGTATCGGCGTACGGGCGCTGCTGATTGCGGTCAATACCTGGCTGATTATTCACGCCTCGCTGGAATCGGCGCT
GACGGCTGGCTTGTGGAATGCTGGTTCGCTCAATGGCATCACATGGGAGAAAAGCCTGCCGGCGACCGGGATGATTATCG
TCGCCTGCATGCTGGCGCGTTGCTTATCCGCTCCGATGCGGTTGCTCGAAATGGGCGATGATGCCGCCTGTGCGCTGGGC
GTACCGGTGGCGCGTTCACGTTTATTGCTGATGCTGGCGGGCGTGGCGTTGACCGCCGCGGCCACCGCGCTGGCCGGGCC
AATTTCCTTTATTGCGCTGGTGTCACCGCAAATTTCGCGTCGTCTTTGCGCCAGCCAGCAGCACGCTTTATTTTTCGCGG
CGCTGACCGGTGCGCTGCTGTTGCTCGCCGCCGATGTCACTGCACAACGGCTGTTCACGCCCTATCAGTTACCCGTGGGC
GTGCTGACCGTCAGTCTGGGCGGCATTTATCTGATTGGGTTGCTGATCCGGGAGTCGCGACGCTCATGA

Protein sequence :
MSQTLTEPRPLKKPLLLSRPFLTACGLVLCLILLAVYALGSGTLALTPSQVVSALLGDGPKNLSIIVTQWRLPRVVMAMI
LGAALGISGAIFQSLLRNPLGSPDVIGFNTGAYTGVLLIIVLFNGAAGDLLPGAMAGGVVTALVVYALAWRQGIETFRLI
IVGIGVRALLIAVNTWLIIHASLESALTAGLWNAGSLNGITWEKSLPATGMIIVACMLARCLSAPMRLLEMGDDAACALG
VPVARSRLLLMLAGVALTAAATALAGPISFIALVSPQISRRLCASQQHALFFAALTGALLLLAADVTAQRLFTPYQLPVG
VLTVSLGGIYLIGLLIRESRRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagB YP_003782431.1 integral membrane protein Not tested PiCp 1 Protein 5e-43 52
fagB YP_005684489.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 5e-43 52
fagB YP_005680308.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 1e-42 52
fagB YP_005682398.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 5e-43 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_0551 YP_004211306.1 transport system permease VFG0928 Protein 3e-70 65