Gene Information

Name : Rahaq_0550 (Rahaq_0550)
Accession : YP_004211305.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 597564 - 598361 bp
Length : 798 bp
Strand : -
Note : KEGG: spe:Spro_3426 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAATACTGAACACTCTTCCCCTTTGTACGCGAAAGATCTCACGCTGGGCTACGATAAAAAAATCGTCGCCCGCGAACT
CTCCGTCTCTATCCCTCAGGGAAAACTCACCGTGATTATCGGGCCGAATGCCTGCGGTAAATCCACACTATTGCGCACGC
TCAGCCGCCTGATGCCGCCGCAATCCGGCACGGTATTTCTGGACGGCAAACTGATCGGTGATTACGGCACCAGAGACGTC
GCGAAACGTCTGGGTTTACTGCCGCAAAGTTCAACGGCGCCGGGCGATATCAGTGTGGCGGATCTGGTGGCCCGCGGGCG
TTACCCGCATCAGAGCCTGTTCAGCCGCTGGACAGCGCAAGATACGCTGGCGGTGAACGACGCCATGCACGCGACGGGAG
TATTCGAACTGGCGGAAAGCACGGTGAATTCACTTTCCGGCGGACAGCGCCAGCGGGTGTGGATAGCCATGGTGCTGGCG
CAACAAACGCCGTTGTTATTGCTGGATGAACCGACAACCTGGCTGGATATCGCGCATCAGATTGATTTGATGGAACTGAT
GTGTCGCCTGAATCAGGAAAACGGCCGCACGCTGGTGGTGGTGTTGCACGACCTGAATCAGGCATGTCGTTACGCCGGGC
ATCTGATTGCCATGCGCGATGGAAAAATACTGGCTGAGGGCGCACCGGCAGACATCGTCACACCGGCACTGATCGAACAG
GTTTTCGGGCTACGCTGCGCCATTATCGACTGTCCGGTTTCGCATACACCGTTAATTATCCCGCTGGGTAACGGTTGA

Protein sequence : 
MNTEHSSPLYAKDLTLGYDKKIVARELSVSIPQGKLTVIIGPNACGKSTLLRTLSRLMPPQSGTVFLDGKLIGDYGTRDV
AKRLGLLPQSSTAPGDISVADLVARGRYPHQSLFSRWTAQDTLAVNDAMHATGVFELAESTVNSLSGGQRQRVWIAMVLA
QQTPLLLLDEPTTWLDIAHQIDLMELMCRLNQENGRTLVVVLHDLNQACRYAGHLIAMRDGKILAEGAPADIVTPALIEQ
VFGLRCAIIDCPVSHTPLIIPLGNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-65 53
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-65 53
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-52 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-65 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-65 50
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-62 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-60 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-60 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-54 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_0550 YP_004211305.1 ABC transporter BAC0164 Protein 3e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_0550 YP_004211305.1 ABC transporter VFG0925 Protein 3e-86 65
Rahaq_0550 YP_004211305.1 ABC transporter VFG1042 Protein 2e-52 50