Gene Information

Name : Rahaq_0475 (Rahaq_0475)
Accession : YP_004211231.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 508129 - 508791 bp
Length : 663 bp
Strand : -
Note : KEGG: spe:Spro_0478 DNA-binding transcriptional regulator BasR; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
ATGAAACTGCTGATAGTTGAAGATGATGAACTTTTACGGCAGGGATTAACGCTGGCACTTACCAGTGAAAATTATGCCTG
CGACTGCGCGTCAACCGCGGCCGAGGCGCAGAGTCTGATCCAAACCAGTCAGTACAGTCTGGTGATCCTGGATTTAGGAT
TGCCAGACAAAGATGGCGCAACGCTGCTGCGCCAGTGGCGGCGTCAAAGTATTTCCCTGCCCGTGTTGATTCTTACCGCC
CGCGATGCACTTGAAGACCGCGTCGATGGCCTTGACGCCGGTGCCGATGACTATCTGATTAAACCCTTTGCCTTAGTCGA
ATTACAGGCTCGTGTCCGCGCCCTGATCCGCCGTTATCAGGGGCAGAGTGACAACCAGATTTCCGTCGGCAACCTGAAAA
TCAATCTCTCCTCTCAGCAGGCTTATCTCAATGATGCGCCGGTAGAGGTCACGCCCAAAGAGTTCGCGATTTTGTCACGA
CTGATGATGCGTGCCGGGCAGACTGTAAACCGCGAGTTGCTCCAGCAAGATCTCTATACCTGGCAGGATGATTTAGGCTC
CAATACGCTTGAGGTACATGTTCATAATCTGCGCCGCAAATTGGGTAAAGAAGTCATCAGAACTGTACGTGGTATCGGCT
ACAGGCTGGAAATAATCGTATGA

Protein sequence : 
MKLLIVEDDELLRQGLTLALTSENYACDCASTAAEAQSLIQTSQYSLVILDLGLPDKDGATLLRQWRRQSISLPVLILTA
RDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQGQSDNQISVGNLKINLSSQQAYLNDAPVEVTPKEFAILSR
LMMRAGQTVNRELLQQDLYTWQDDLGSNTLEVHVHNLRRKLGKEVIRTVRGIGYRLEIIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-40 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-29 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_0475 YP_004211231.1 transcriptional regulator BAC0487 Protein 3e-64 66
Rahaq_0475 YP_004211231.1 transcriptional regulator NC_002516.2.879194.p Protein 3e-35 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_0475 YP_004211231.1 transcriptional regulator VFG0473 Protein 5e-59 57
Rahaq_0475 YP_004211231.1 transcriptional regulator VFG0596 Protein 2e-29 41