|
Name : Rahaq_3944 (Rahaq_3944) Accession : YP_004214660.1 Strain : Rahnella sp. Y9602 Genome accession: NC_015061 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4297591 - 4299120 bp Length : 1530 bp Strand : + Note : PFAM: type II secretion system protein E; KEGG: cro:ROD_46531 type IV pilus biogenesis protein CfcH DNA sequence : GTGATCCTGGATTTCATACGACTTACGGACGATTCCATACACAGCGGCGAATGGACTTTTGCTGAAATTGAGGATCGCAT GTTGCTCGCCCGTTTGGGCACGCAGGAGTATCTCGTTTCTCAACGTTCTTTAATTGAAGAGCTGCATATTCTTCAATATG AAGTTCGCAAAATGAACGACATCCATCGTCACAAGATTGTCGGAATCGGGGGCGTCACAGAAGCCGTTTATTTCAAAATT TATGAACTTGTTTCTTTGCAGAAACAGAGCCGTGTTGCACTGGATATTAGTGAAACGCAGAAGGAACTTGAAGCCATATT GATTGAAGCCGTTGATATGGGGGCCAGTGACCTTCATATCACCCGCAATGATATTCTTGCGCAGCTTGAGGTCAGGGTAA ATGGCATGCTGCTACCAATGATGCAGATGCCTGCCAGCAAATGCGATGAGCTGGTATTCGTCCTGTACAACGTACAAGCC AGCACCCGTGATACCACCTGGAACCGTACTATTCCGCAAAGTGCCAATATTCTCTATACGCTTAACGGATTAAGTTTTCG TTTCCGCTACGCCCACTTTCCCATTTTTGGTGAAACGAACGATTGTTTTCATGCTGTATTACGTATTATCCCATCAGGAC TCTCTAAAGGAGCCGTCGCTAATCTCAATAAACTCGGTATATCGGAAGAAGAATTAGAAGATCTGAAAAAGATCCTCAGT AATCCCTATGGGGCATATTTTATTGCGGGCACCACTGGTTCAGGAAAATCCACCACTCTGAAGAACCTGATGGAGTGGCT GCAGGTTAACCGTTATGGCAATAAAGGCTGTTTTCTTACTGTAGAAGATCCTGTCGAATATCAGATATTTGGAGCAAAAC AAAGCTCAGTGGTCAGTGTTGAAGGTGGCGGTTTCCATTCTGCTATCAAATCCGCATTACGCCGCGATCCTGATGTTCTG ATGGTGGGCGAAATCCGCGACTCTATCTCCGCGAATGCCCTCGCCGGCGCAGTTGAAAGCGGTCACTACTGTTTTACGAC TGTTCATGCAGGGAATATTGTCTCCCTGCTACAGCGCTTATCCGCCATGGGCATCACCAGCGATAAACTCTCCACACCGG GCTTTATTGCCGGATTGCAGTGTCAAAAACTTGTCCCTGTTATTTGTCCTCATTGCCATCATTCTGTCGAAATCACATTT GGTGAGAAATTGATGACCCTCTACGAGCAAAACGAAAGGGGGTGTGAAAAATGTAAGCATACCGGTATAAGCGGCAGGCA ACTTGTCATGGAATATATGCGACCCACATATGATGAACTCGCCGCAATATCTAAACAAGAGTGGTTACAGGTTTACACCT TATGGCGAAAAAAACGCATCTCGTCACCGGGTCTGAGTGAGGGATTTGAAATAAAAGAAAAGGTATTTGCGGAAGTACTT CGTGGTCGGGTTTGTGCTACCTGGTTCAGTATGGAATTTGGCGATGTAGATAAAGACAACTCGGAGATTATCCATGGCAA AGTTCGGTAA Protein sequence : MILDFIRLTDDSIHSGEWTFAEIEDRMLLARLGTQEYLVSQRSLIEELHILQYEVRKMNDIHRHKIVGIGGVTEAVYFKI YELVSLQKQSRVALDISETQKELEAILIEAVDMGASDLHITRNDILAQLEVRVNGMLLPMMQMPASKCDELVFVLYNVQA STRDTTWNRTIPQSANILYTLNGLSFRFRYAHFPIFGETNDCFHAVLRIIPSGLSKGAVANLNKLGISEEELEDLKKILS NPYGAYFIAGTTGSGKSTTLKNLMEWLQVNRYGNKGCFLTVEDPVEYQIFGAKQSSVVSVEGGGFHSAIKSALRRDPDVL MVGEIRDSISANALAGAVESGHYCFTTVHAGNIVSLLQRLSAMGITSDKLSTPGFIAGLQCQKLVPVICPHCHHSVEITF GEKLMTLYEQNERGCEKCKHTGISGRQLVMEYMRPTYDELAAISKQEWLQVYTLWRKKRISSPGLSEGFEIKEKVFAEVL RGRVCATWFSMEFGDVDKDNSEIIHGKVR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tcpT | YP_001216316.1 | toxin co-regulated pilus biosynthesis protein T | Virulence | VPI-1 | Protein | 3e-88 | 45 |
| VC0835 | NP_230483.1 | toxin co-regulated pilus biosynthesis protein T | Virulence | VPI-1 | Protein | 2e-88 | 45 |
| tcpT | AAK20762.1 | toxin-coregulated pilus biosynthesis protein T | Virulence | VPI | Protein | 2e-88 | 45 |
| tcpT | CAA45462.1 | - | Virulence | VPI | Protein | 2e-88 | 45 |
| tcpT | AAK20792.1 | toxin-coregulated pilus biosynthesis protein T | Virulence | VPI | Protein | 2e-88 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rahaq_3944 | YP_004214660.1 | type II secretion system protein E | VFG0098 | Protein | 1e-88 | 45 |
