Gene Information

Name : Rahaq_0388 (Rahaq_0388)
Accession : YP_004211145.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : Pili assembly chaperone, N-terminal protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 417212 - 417949 bp
Length : 738 bp
Strand : +
Note : PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ypb:YPTS_4111 pili assembly chaperone, N-terminal

DNA sequence : 
ATGAACAGGTATTTTTTGCGTTTTGGGGCAGCATTACTGCTGATGATTGGCATGACTTATCCGACTTTCGCCGCCGTCAA
TCTGGACCGGACACGCATCATCTATAACGCCAGTGATAAATCCGTCAGCGTGATGCTGGAAAACCAGAGCAAAGATCTAC
CGTATCTTGCGCAGGTCTGGCTGGAGAACGAGCAGGGCGAAAAAATTACCTCTCCGCTGGTGGCGTTGCCGCCGATGCAG
CGCATTGATGCTGGCCAGAAAAGCCAGATCCGCATTTTGCAGTTACCCGAAACCGCCGGTCTGCCGAAAGATCGCGAATC
GCTGTTTTACTTTAACGTGCGTGAAGTGCCGCCAAAAAGTGACATGGCGAACGTGATGCAGGTGGCGATCCAAAGCCGCG
TGAAGCTGTTTTTCCGTCCGGTGGAACTCAGGAAGCTGGTGAAAGGTCACTGGCAGGAACAGCTTCAGGTTGCCCGTCTC
AGTGATGGGCTAAAACTGACCAATCCGACACCGTTTTATATCACTGTCGGCTATCTGGGCAAAGACAACAAAGGCAATAT
CCCTGGTTTTGACAGCGTGATGCTCGCACCGTTCGCCACCGAAAATCTCACCGGCAAGCAGTACGTTAGCCAGCAATACA
GTCTGGGTTACATGGATGATTACGGCGGTTTGCAGGTGAACGAGTACAACTGCCAGACACAACAATGTCAGCGCATCAGC
AAAGACGCAAAACGCTAA

Protein sequence : 
MNRYFLRFGAALLLMIGMTYPTFAAVNLDRTRIIYNASDKSVSVMLENQSKDLPYLAQVWLENEQGEKITSPLVALPPMQ
RIDAGQKSQIRILQLPETAGLPKDRESLFYFNVREVPPKSDMANVMQVAIQSRVKLFFRPVELRKLVKGHWQEQLQVARL
SDGLKLTNPTPFYITVGYLGKDNKGNIPGFDSVMLAPFATENLTGKQYVSQQYSLGYMDDYGGLQVNEYNCQTQQCQRIS
KDAKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 4e-51 47
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 1e-50 45
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 1e-50 45
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 3e-50 45
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 3e-50 45
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 2e-50 45
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 2e-50 45
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 4e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_0388 YP_004211145.1 Pili assembly chaperone, N-terminal protein VFG1547 Protein 6e-51 45
Rahaq_0388 YP_004211145.1 Pili assembly chaperone, N-terminal protein VFG0896 Protein 1e-50 45
Rahaq_0388 YP_004211145.1 Pili assembly chaperone, N-terminal protein VFG0885 Protein 2e-44 43