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Name : Rahaq_0387 (Rahaq_0387) Accession : YP_004211144.1 Strain : Rahnella sp. Y9602 Genome accession: NC_015061 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 414664 - 417165 bp Length : 2502 bp Strand : + Note : PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: yps:YPTB3895 outer membrane fimbrial usher porin DNA sequence : ATGTCGTTTGCGATGAATAGAACATCGGCTGAAATCAAGAATGTCCTGTGGTTTATTTTTATTCTGTCAGGATGCTTTAT TTCAGTCAGAAGCTTCGCAGTAGAATTTAACGTTAACTTCATTGATTCTGCCGATCGCAATAATGTCGATCTGTCACGAT TTCAGGTAGCCGATTATATCGCGCCCGGTGAATACCTGCTGGATGTGGTGCTCAATGGCCGCACGTTCGGCGAACAAAGC GTGATTCACTATATTCCCACTGCGGATAAGAAAAATAGCCGCCTGTGTTTACCGCCGGTACTGGTGGATAAATTCGAACT CACTAAAGACGCGCGCGAAAAGCTGACTTTGTGGCATCACGGTGAATGCACATCTCTCGATCAGCAGCAGGAAGTCACCG CACGTTACGATCAGGAAAAACAAACGCTGAATATCAGCATTCCCCAGGCCTGGCTGACCTTTCACGATCAAAACTGGGTG CCGCCCTCACAGTGGGATGATGGCGTCAACGGCGCATTGCTCGATTACAACCTGCTCGGCAGCCGATACATGCCGCAGTC CGGCGACAGCACCACCAGTTTCAGCAGTTACGGCACCACCGGTTTTAACCTCGGGCCGTGGCGCGCCCGTGCCGATTATC AGTATTCTTCGTCGCGCACGTCCGGTGCGCCCGCCAGTGATAAATTCACCTGGACGCAAACCTATCTGTATCGTGCGCTG CCTTCTGTGGGCGCACGCCTGACCGGCGGGCAGACCTATTTAAGCTCAGATATTTTCGATTCATTCCGTTTTCTCGGTGT TTCACTCAACAGCGATCAGCGCATGTTGCCTCCGTCGCTGCGAGGTTATGCGCCGCAAGTCACCGGCATCGCCAAAACCA ATGCCAAAGTGAGTATCAGTCAGAACGGGCGGGTGATTTATCAGACCAACGTGTCACCGGGCCCATTTGTGGTTCAGGAT CTGACCGAAGCGGTACAGGGCGCGCTGGATGTCAAAATCGAAGAAGAAAACGGTAGCGTGACGACTTATCAGGTGACCAC CGCGACCATTCCGTTCCTGACCCGCAAAGGCCAGGTGCGTTTCAAAACCGCAATGGGCAAACCGACCACCGGCAGCAGCA ATCACGTCTTGCAGCCGGGTTTTTACAGCGGCGAAATGTCCTGGGGTGCGCTGAATGATTTCTCGCTTTACGGCGGTCTG ATCAGCACCACCGGTAACTATCAGGCGCAGGCCATCGGCGTCGGGCAAAACCTGCAAAAACTCGGTGCCGTATCTTTTGA TGTCACGCGTTCCTCGGCGACCGTACCGGTGGCAGGGAAACAAACCGGGCTGAGTTACCGCGCCAACTACTCCAAGCGGT TTGACTCGACCGGCAGTCAGATTACGTTTGCCGGATACCGCTTCTCGGAAAAAACGTTTATGTCGTTCAGCCAGTACCTC GACAAGGTGAACGGCGACGGTTATTCCCGCGATGACAAACAAACCTACACCGTGACGGCAAATCAGTACCTGCCGTGGCC GGCGATCACGCTCTATCTCTCTGCTACCCACAAGGTCTACTGGAATGAGAGTGCGAGTAACAATTACAGCGTGTCGGTCA GCAAGGTTTTCGATATCGGCCGCTTTACCGGCATTTCTGCGACGTTTTCCGCCAGCAAGCTGAACTACCGCGATACCGAT GAAAATCAGATGTTTCTGTCGCTCAGTTTGCCGTTGTCTTCCGGGCAACAGATCAGCTACGACGCACAGCAGGATTCGCA AAGTGGTTACTCGCAAACGGCGTCGTATTACAACAGCCAGGATCCGAACAATAGCTGGCGCGTGGGCGCGGGCGGGAGCA GCCCGGATCTGCAAAAAGGTAACGGTGTGTTCCGCGCCAACTATCAGCATATGTCGCCGTACGGTCAGTTCGGTGCGAAC GGCAGCGTGAAAAATAACGATTACCGCTCAGTGAATGCCAACTGGTACGGATCGTTTACTGCGACAGCGGCAGGTGCAGC ATTGCATCAGAGCAGCGCCGGCAGCGAGCCACGCATGATGGTATCAACCGGCGTGAAAGGCATTCCGATCAGCGACGGTG CGTCAGTGACCAACGATTACGGCATTGCTGTTGTGAATGGCGTGTCCAGCTACCAGACCTCCGATATCCGCGTTGATGTG AATAATTTGCCGGATGACGTGGAAGTTTACAGCTCGGTGGTCAGCAAAACCCTGACGGAAGGCGCAATAGGCTTTCGCAA AATCCGCGCCATTAAAGGTGAACGTCTGATGGCGGTAATACGCCTCGCTGATGGCAGCCACCCGCCGCTGGGCGCCGCCG TTACCGACAACAGTTCCGGGTTTGAAGCGGGCCTGATTGGCGACAGTGGTCTGGCGTACCTGGCCGGAGTATCCGGCGAG AAATCCCTGACTGTTCGCTGGGGAGACGGGCAGCAATGTCAGATCCAGGTGCCACCTCAGCCCGTGACATATTCAGGGCA GGTATTGCTGCCCTGCACTTAA Protein sequence : MSFAMNRTSAEIKNVLWFIFILSGCFISVRSFAVEFNVNFIDSADRNNVDLSRFQVADYIAPGEYLLDVVLNGRTFGEQS VIHYIPTADKKNSRLCLPPVLVDKFELTKDAREKLTLWHHGECTSLDQQQEVTARYDQEKQTLNISIPQAWLTFHDQNWV PPSQWDDGVNGALLDYNLLGSRYMPQSGDSTTSFSSYGTTGFNLGPWRARADYQYSSSRTSGAPASDKFTWTQTYLYRAL PSVGARLTGGQTYLSSDIFDSFRFLGVSLNSDQRMLPPSLRGYAPQVTGIAKTNAKVSISQNGRVIYQTNVSPGPFVVQD LTEAVQGALDVKIEEENGSVTTYQVTTATIPFLTRKGQVRFKTAMGKPTTGSSNHVLQPGFYSGEMSWGALNDFSLYGGL ISTTGNYQAQAIGVGQNLQKLGAVSFDVTRSSATVPVAGKQTGLSYRANYSKRFDSTGSQITFAGYRFSEKTFMSFSQYL DKVNGDGYSRDDKQTYTVTANQYLPWPAITLYLSATHKVYWNESASNNYSVSVSKVFDIGRFTGISATFSASKLNYRDTD ENQMFLSLSLPLSSGQQISYDAQQDSQSGYSQTASYYNSQDPNNSWRVGAGGSSPDLQKGNGVFRANYQHMSPYGQFGAN GSVKNNDYRSVNANWYGSFTATAAGAALHQSSAGSEPRMMVSTGVKGIPISDGASVTNDYGIAVVNGVSSYQTSDIRVDV NNLPDDVEVYSSVVSKTLTEGAIGFRKIRAIKGERLMAVIRLADGSHPPLGAAVTDNSSGFEAGLIGDSGLAYLAGVSGE KSLTVRWGDGQQCQIQVPPQPVTYSGQVLLPCT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 3e-130 | 42 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 4e-129 | 42 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 3e-129 | 42 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 8e-130 | 42 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 8e-130 | 42 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 4e-130 | 42 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 1e-134 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rahaq_0387 | YP_004211144.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 2e-130 | 42 |
| Rahaq_0387 | YP_004211144.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 4e-130 | 42 |
| Rahaq_0387 | YP_004211144.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 3e-130 | 42 |
