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Name : Rahaq_3714 (Rahaq_3714) Accession : YP_004214430.1 Strain : Rahnella sp. Y9602 Genome accession: NC_015061 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4027729 - 4029225 bp Length : 1497 bp Strand : + Note : PFAM: type II secretion system protein E; KEGG: spe:Spro_0777 hypothetical protein DNA sequence : ATGAGTGATATGCCACTGCGCCCCGAGTCTCCGCCCGATAATGATCGCCTGCAAAGCGAAGCGTCACTTGAAGCACTGTG TCAGCGCTACAAAGCCGTTGTATTGCATCGCGACAACCAGACTCTTCATGTTGCATGCCATGAAACAGAAGCAGACACGG ATGCCTTGAGTAATGTATTGCGCTTTACCACCGGCTTAAAAGTGCAGCTTGAACGCTGGCCACAAACGCGGCTTGAACAA GTCATGGAGCAAGGAAATTCAGAAATAAAGAAAAAAACGGCCGCAGACGAATCGTGGTCATCCGCGCAAAGCGATGAAAA CAATGAACTGAATAATCAGAGTGATGCGCCGGTCATTAATTCTCTCAATCAGATACTCAGGCAGGCCATCACCCGCAGGG CTTCAGATATACACTTTGAGCCGTACGAGCACAGTTTCCGGGTTCGTATGCGAATTGACGGAGTATTGCAGGAAGTCCCC GGACCTGAATTTTCGATGGCAGCGGGCGTGTGCGCACGACTAAAGATTATGGGGCAGTTGAATGTCGCTGAGCGACGGTT ACCCCAAGATGGCCAGCTCTCAGTCATGCTGCAAAATCAGAGATATTCCATGAGAGTATCTTCTCTGCCGACCTTACACG GCGAAAAGATCGTGCTGCGCATTCTGCATATGACTCAGCAAGATCTCTCTATGCCTCAACTGGGCTTCACACCACGGGAT CTGGACTATTTCAAAGCTGCGCTTAAACATCCACAAGGGCTAATTCTGGTCACCGGCCCGACAGGCAGCGGAAAAACGGT CACACTTTACAGTGGTCTTCGTCATCTTAATGCCATCTCCCGCAATATTTGCAGCGTGGAAGACCCGATTGAGATCCCGG TCAGTGGCATCAATCAGACCCAGATTAACAGCAAAACAGACCTCAGTTTTGCCAGTGTCCTGCGTGCGTTATTACGTCAG GATCCTGATGTGATTATGGTCGGAGAGATCCGCGATAAAGAAACGGCCGAAATCGCGGTAAAAGCCGCTCAGACCGGACA TCTGGTGCTCTCAACACTGCATACCAATTCCACTTGCGAAACACTGACCCGCCTGCGACAGATGGGGATTGAAGGTTTTC ATATTGCTGCCAGCTTACGTTTGGTTATTGCCCAGCGGCTGGTACGAAAACTCTGCCCGCATTGCCGTAAACCGCATGTA TCACTGGTCGAAAAAGGCGCTGATGGCAGCAGCGGGCACATGCAGTTGTGGCTACCTGCAGGATGCCATCAATGCTTTTC GGGCTATTACGGACGCACCGGTATTTATGAAACGCTGAACATAACACCCGGTTTACAACAGGCGCTGGTGGCAGAGGCAA GTGTCAATGAGTTGAGTAAGATTGCCCGCGAACAAGGGCAAAAAACGTTGCAGGAAGCCGGTATGGCGCTGGTCGAACAA GGGATCACCTCACTTGAAGAACTTTATCGTGTTACCGGTGAAGGCGCGGATACATGA Protein sequence : MSDMPLRPESPPDNDRLQSEASLEALCQRYKAVVLHRDNQTLHVACHETEADTDALSNVLRFTTGLKVQLERWPQTRLEQ VMEQGNSEIKKKTAADESWSSAQSDENNELNNQSDAPVINSLNQILRQAITRRASDIHFEPYEHSFRVRMRIDGVLQEVP GPEFSMAAGVCARLKIMGQLNVAERRLPQDGQLSVMLQNQRYSMRVSSLPTLHGEKIVLRILHMTQQDLSMPQLGFTPRD LDYFKAALKHPQGLILVTGPTGSGKTVTLYSGLRHLNAISRNICSVEDPIEIPVSGINQTQINSKTDLSFASVLRALLRQ DPDVIMVGEIRDKETAEIAVKAAQTGHLVLSTLHTNSTCETLTRLRQMGIEGFHIAASLRLVIAQRLVRKLCPHCRKPHV SLVEKGADGSSGHMQLWLPAGCHQCFSGYYGRTGIYETLNITPGLQQALVAEASVNELSKIAREQGQKTLQEAGMALVEQ GITSLEELYRVTGEGADT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-76 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-76 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rahaq_3714 | YP_004214430.1 | type II secretion system protein E | VFG2426 | Protein | 1e-83 | 51 |
| Rahaq_3714 | YP_004214430.1 | type II secretion system protein E | VFG1876 | Protein | 5e-80 | 48 |
| Rahaq_3714 | YP_004214430.1 | type II secretion system protein E | VFG0182 | Protein | 5e-78 | 46 |
| Rahaq_3714 | YP_004214430.1 | type II secretion system protein E | VFG2048 | Protein | 2e-77 | 45 |
| Rahaq_3714 | YP_004214430.1 | type II secretion system protein E | VFG0112 | Protein | 9e-97 | 44 |
| Rahaq_3714 | YP_004214430.1 | type II secretion system protein E | VFG1880 | Protein | 4e-94 | 44 |
