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Name : Rahaq_0337 (Rahaq_0337) Accession : YP_004211094.1 Strain : Rahnella sp. Y9602 Genome accession: NC_015061 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 373967 - 375946 bp Length : 1980 bp Strand : - Note : KEGG: cro:ROD_44971 T2SS protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein DNA sequence : ATGAAGAAGTTCATTAACTCTCTCCTAGTAAAGGCATGCATATTATTTGCCACCCTTCCAGGGATTGTACACGCGGAAGA GTTTACTGCGAGCTTTAAAGGCACGGATATTAAAGAGTTTATTGATACGGTAAGTAAAAATCTGAATAAAACTATCCTTA TCGATCCCTCCGTGCAGGGAACTGTTTCTGTCAGAAGTTATGATGTTTTGAATGAAGAACAATACTATCAATTTTTTCTC AGCGTGCTGGATGTCTATGGTTTTGCTGTGATCCCCATGGACAACGGGCTACTGAAGGTCGTGCGTTCAGCGAATGCCAA AATGTCTGGCGTGCCCGTTGCAGACAAAAACAACCCCGGCAAGGGAGATGAAATTATCACCCGCGTCGTAACGCTTCTTA ATGTGCCGGTCAGAGAGTTAGCACCTTTGCTTCGCCAGATGAATGACAGTACCGGAGTAGGGAATGTTGTTCATTACGAA CCCTCCAATGTTTTGCTTCTGACGGGCCGGGCATCGGTGGTCAACCGGCTTATTAAGCTTGTCGAACGCGTTGACGCGAT GGGTGACCAGCAAAGGCAAACCATTAAACTAAAATATGCTTCTGCCCCGGAAATGGCTGAGATGATGAACAACCTGGTTC GCGAGGAATCTAAAGGACAATCATCGTCCATATTACAAGCCAAAATCGTCGCGGATGAGAGAACCAATACCCTAATCATC AGCGGGCCAGAAGGTGTGCGCAGCCGCGCAGCAAAACTGGTTAGTCAGCTTGATAAAGACCAGTCATCTCAGGGCAATAC GCGTGTTTTCTATCTGAAATATGCCAAAGCGGAAAAAATCGTTCCCGTACTTACTGGCATCACAGAAGAGATGAAAGAAG GCAAAACAGCTCAGCCTTCCGGCGCGTCTAACAAGCCGATGAGCATCACTGCAGATGAACAAACAAACTCCATCGTCATT ACTGCACAGCAGGATGTGATGCAGTCACTCGAACAGGTCATCACCAAGCTCGATATCCGCCGTGCACAGGTGTTAGTCGA AGCCATTATTGTCGAAGTACAGGATGGCAACGGGCTTAATCTGGGTATCCAGTGGAGCAACAACCAGGTTGGTGGAACAC AATTTACCGGAACCGGCGCGCCAATATCGACCGTTGCGGCCGGAGTTCGCCAGTACAAAAAAGAGGGCATTATCAGCAGC GATAATCCTCTGAGCAGCACTTTGCAGACCTTCAATGGCATGACCGCAGGCTTCTTTAGCGGTGACTGGAATGTCTTACT CACTGCGTTATCCACCAGTAATAAAAACGATATTCTTGCCACCCCAAGCATTGTCACTCTCGATAATAAAGAAGCCTCAT TCAACGTCGGTCAGGAAGTCCCCTCCCTGTCCGGCTCACAAACTACATCTGGCGATAACATTTATAGCAGCGTGGTTTAC AAAACCGTCGGCACAAAATTAAAAGTCACTCCGCAGATCAATGAAGGTGACTCTGTGCTGATGGAAATCGAACAGGAAGT TTCCAGCGTTGATACTTCAACTAACTCTAGTCTTGGTCCGACCTTCAATACCCGCACCATTTCCAATGCCGTGCTGGTTC GTACGGGTGAAACTGTAGTCCTGGGCGGTTTGCTGGATGACAGTACCAAAGAAACCAAATCCAAAGTTCCTCTGTTGGGT GATATTCCGTGGATAGGCAATTTGTTCCGCTATACCAGCACTGAATCAGCAAAACGTAATCTGATGGTGTTTATCAGGCC GACCATTATTCGTGATGATGAGGTTTACTCTTCCATTTCCAATAAGAAATATTCGCACTTTCAAAAAATTCAAAAAACGC GTCAGGATGAGGACCATCAGGATCTGCTCACGCCAAATACCCGTTCTATTTTGCCTGACTATCCTGGGAACAATGTGCCA AAAGCATCCATATCCACCACGCCTGATGACGGCAAACCTCGTAATCCGTTTAGTGGATAA Protein sequence : MKKFINSLLVKACILFATLPGIVHAEEFTASFKGTDIKEFIDTVSKNLNKTILIDPSVQGTVSVRSYDVLNEEQYYQFFL SVLDVYGFAVIPMDNGLLKVVRSANAKMSGVPVADKNNPGKGDEIITRVVTLLNVPVRELAPLLRQMNDSTGVGNVVHYE PSNVLLLTGRASVVNRLIKLVERVDAMGDQQRQTIKLKYASAPEMAEMMNNLVREESKGQSSSILQAKIVADERTNTLII SGPEGVRSRAAKLVSQLDKDQSSQGNTRVFYLKYAKAEKIVPVLTGITEEMKEGKTAQPSGASNKPMSITADEQTNSIVI TAQQDVMQSLEQVITKLDIRRAQVLVEAIIVEVQDGNGLNLGIQWSNNQVGGTQFTGTGAPISTVAAGVRQYKKEGIISS DNPLSSTLQTFNGMTAGFFSGDWNVLLTALSTSNKNDILATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVY KTVGTKLKVTPQINEGDSVLMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLGGLLDDSTKETKSKVPLLG DIPWIGNLFRYTSTESAKRNLMVFIRPTIIRDDEVYSSISNKKYSHFQKIQKTRQDEDHQDLLTPNTRSILPDYPGNNVP KASISTTPDDGKPRNPFSG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 5e-136 | 47 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-129 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rahaq_0337 | YP_004211094.1 | general secretion pathway protein D | VFG2047 | Protein | 1e-127 | 46 |
