Gene Information

Name : Rahaq_3006 (Rahaq_3006)
Accession : YP_004213727.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 3256102 - 3256758 bp
Length : 657 bp
Strand : -
Note : KEGG: spe:Spro_1848 response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR

DNA sequence : 
TTGATAAGCGTTCTTCTTGTTGATGACCACGAACTGGTGCGCGCAGGGATCCGACGCATTCTTGAAGATATCAAAGGCAT
CAAAGTTGTTGGTGAGGCGCAATGCGGTGAAGATGCCGTCAAATGGTGTCGGACCAATGACGTTGATATTGTCCTGATGG
ATATGAACATGCCAGGTATTGGCGGGCTTGAAGCGACCAAGAAAATTGTCCGCTTTTCGCCAGATATCAAGATCATCATG
TTAACGATCTATACTGAAAATCCGCTACCGGCCAAAGTGATGCAGGCGGGGGCTTCCGGTTACCTGAGCAAAGGCGCAGC
TCCACAGGAAGTGGTCAATGCTATCCGTCTGGTTGATTCGGGTCAGCGTTATATTGCCTCCGACATTGCTCAGCAAATGG
CACTGAGCCAGATTGAACCACAATCTGAAACGCCTTTTGATTCCTTATCCGAGCGTGAACTGCAGATCATGCTGATGATC
ACTAAGGGACAAAAGGTCAATGAAATTTCTGAACAGCTGAACTTGAGCCCGAAGACAGTTAACAGTTATCGTTATCGGAT
GTTTAGTAAATTAAATATCAGCGGTGATGTTGAGTTAACACATCTGGCAATCCGGCACGGTTTGTTCAATACGGAGACTT
TATCCGGCAGTGAGTGA

Protein sequence : 
MISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCRTNDVDIVLMDMNMPGIGGLEATKKIVRFSPDIKIIM
LTIYTENPLPAKVMQAGASGYLSKGAAPQEVVNAIRLVDSGQRYIASDIAQQMALSQIEPQSETPFDSLSERELQIMLMI
TKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGLFNTETLSGSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 3e-48 49
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 3e-48 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_3006 YP_004213727.1 LuxR family transcriptional regulator VFG1889 Protein 5e-55 51