Gene Information

Name : Rahaq_2810 (Rahaq_2810)
Accession : YP_004213540.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : transport system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 3056668 - 3057696 bp
Length : 1029 bp
Strand : +
Note : PFAM: transport system permease protein; KEGG: yen:YE0328 hemin transport system permease protein HmuU

DNA sequence : 
ATGAGTAGCATGAGCCCTCCGGTGCCGTCAGGTCGCCGTTCGCCAGTTTGGGCGATGATTGGCCTTGGCGGCGCTCTGCT
GGTGCTGGCCGTGATGGCCGCGAATACCGGCGCGATGTCACTGTCGTTAAGGACGTTACTCGCACGTCCATTTGGCGATA
GTTTATGGCAGGTCTGGCTGACAATCCGCCTTCCCCGCGTGCTGCTGGCTGTGGTAGTCGGTTGCGCGCTGGCCAGTTCC
GGTGCGGTTATGCAGGGATTGTTTCGCAACCCGCTGGCGGACCCCGGCCTGCTTGGGATCAGCAGCGGCGCGGCGCTTGC
GGTTGCCCTGACTATAGTGATGCCACTGGCATTGCCACCCTTGCTGGCCCTGTACAGCCATATGATCAGCGCATTTGCTG
GCAGTCTGGCCATTTCAGCCATCGTCTTTACACTGAGTCGTTTCGGCCATGGTGGGTTATCGCGCTTACTGCTTGCCGGT
ATTGCCATCAATGCACTGTGCGGTGCCGCTGTCGGCGTGCTGACCTACGTCAGTGATGACCAGCAGTTACGCCAGTTCTC
TTTGTGGAGCATGGGCAGTCTCGGGCAGGCGCAATGGCCGACACTGGCTGTGGCCTCTTCGTTGATCCTGCCAGCCTGTG
TTGCGGCCCTGTTCATGGCGCGGCGCCTGAATATCCTGCAATTAGGTGAAGAAGACGCGCACTATCTCGGTGTGAATGTC
CGCCGCACGCAGTTGCAATTATTGCTGCTTAGCGCCCTGCTGGTCGGGGCTGCTGTCGCGGTTTCTGGTGTGATCGGTTT
TATCGGTCTGGTGATCCCGCACCTGTTGCGGATGCGTATTGGCGCAGACCACCGCTGGCTATTACCGGGATCGGCCATGG
CCGGTGCCTGCCTGCTTTTGCTCGCAGACACGCTGGCCCGCACACTGGTTGCTCCGGCAGAAATGCCGGTGGGATTGCTC
ACCAGCCTGATTGGCGGGCCGTATTTCTTATGGCTGATCCTGCGCCCGGGAGTTCCGCGTAATGTCTGA

Protein sequence : 
MSSMSPPVPSGRRSPVWAMIGLGGALLVLAVMAANTGAMSLSLRTLLARPFGDSLWQVWLTIRLPRVLLAVVVGCALASS
GAVMQGLFRNPLADPGLLGISSGAALAVALTIVMPLALPPLLALYSHMISAFAGSLAISAIVFTLSRFGHGGLSRLLLAG
IAINALCGAAVGVLTYVSDDQQLRQFSLWSMGSLGQAQWPTLAVASSLILPACVAALFMARRLNILQLGEEDAHYLGVNV
RRTQLQLLLLSALLVGAAVAVSGVIGFIGLVIPHLLRMRIGADHRWLLPGSAMAGACLLLLADTLARTLVAPAEMPVGLL
TSLIGGPYFLWLILRPGVPRNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecC AAL08453.1 FecC Virulence SRL Protein 3e-13 41
fecD AAL08452.1 FecD Virulence SRL Protein 7e-16 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_2810 YP_004213540.1 transport system permease BAC0163 Protein 5e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_2810 YP_004213540.1 transport system permease VFG0922 Protein 2e-65 67
Rahaq_2810 YP_004213540.1 transport system permease VFG1043 Protein 4e-16 41
Rahaq_2810 YP_004213540.1 transport system permease VFG1044 Protein 2e-13 41
Rahaq_2810 YP_004213540.1 transport system permease VFG0926 Protein 8e-17 41