|
Name : Rahaq_2056 (Rahaq_2056) Accession : YP_004212795.1 Strain : Rahnella sp. Y9602 Genome accession: NC_015061 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2232539 - 2234488 bp Length : 1950 bp Strand : + Note : TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: spe:Spro_2718 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain DNA sequence : ATGCGTCTGTTCATTGCCGAAAAACCCAGCCTTGCCCGCGCGATTGCGGATGTCCTGCCGAAACCTCATCGCCGGGGCGA TGGTTATATTGCCTGTGGCAACGATCAGGTGGTGACCTGGTGCGTCGGCCACTTACTCGAACAGGCGCAGCCCGATGCCT ACGACAGCCGCTTTGCGCGCTGGTCGCTCGCCGATTTGCCGATCATTCCTGAAAAGTGGCAGCTTCAGCCGCGTTCTTCC GTCGCCAAACAACTCAACGTGATTAAACGCTTATTGCTCGAGGCCTCGCAGGTTGTCCACGCCGGTGACCCGGATCGCGA AGGACAGTTGCTGGTGGATGAAGTGCTGGATTATCTCGAACTGACGCCGGAAAAACGTCACGCGACCCAGCGCTGCCTGA TTAACGATCTCAACCCGCAGGCCGTCGAGCGTGCTATTGAGCGGCTGCGCGACAACCGCGATTTTATTCCGCTGTGTGTT TCCGCGCTGGCCCGCGCCCGTGCCGACTGGCTTTACGGCATCAATATGACCCGCGCCTACACCATTCTGGGGCGCAACGC CGGTTACAACGGCGTGCTCTCCGTCGGACGCGTACAGACCCCGGTTCTCGGACTGGTGGTCCGTCGCGATGAAGATATCG AAAACTTCGTGCCGAAAGATTTCTTTGAAGTAAAAGCGCATATCGTCACACCTGCCGAAGAGCGTTTTGTCGCGCTGTGG CAGCCGAGTGATTCCTGCGAGCCGTATCAGGATGAAGAAGGGCGATTGCTGCACCGTCCGCTGGCCGATCATGTCGTGGC GCGTATTGCCGGACAACCGGCGATGGTCACTGGCTATAATGACAAGCGTGAGAATGATATTGCGCCGCTGCCGTTTTCAC TCTCCACATTGCAGATTGAAGGCTCTAAAGCCTTCGGGCTGAGTGCTCAGCAAATTCTTGATATCTGTCAGAAATTGTAT GAAACGCACAAATTGATTACGTATCCGCGTTCGGATTGCCGATATCTGCCAGAAGAGCATTTTGCCGGGCGTCATGCCGT GCTGAATGCCATTGGCGTTCACCGGCCTGACCTGATGCCACAACCGGCAGTGGATACCGATTTACGTAACCGTTGCTGGG ATGACAAAAAGGTTGATGCGCACCATGCGATTATCCCGACGGCGCGCAGCAGTAACGTCAATCTGACGGATGACGAACGC AAAATTTACGGCCTGGTGGCGCGTCAGTATCTGATGCAGTTCTGCCCGGATGCGGTTTACCGCAAATGTGTTATCGACCT GGATATCGCGGGCGGTAAATTTATCGCCAAAGCGCGTTTTCTGGCCGAGGCGGGCTGGCGCACGTTGCTGGGCAGTAAAG AACGCGACGAGGAAAACGAAGGCACGCCACTGCCGGTGGTGGCCAAAGGTGACGAACTGTTGTGCGAGCGCGGAGAAGTG GTTGAACGCCAGACCCAGCCGCCGCGGCCTTTTACCGATGCTACATTGCTTTCCGCCATGACCGGGATTGCGCGTTTTGT GCAGGATAAAGAACTGAAAAAAATCCTGCGTGCGACAGATGGATTAGGTACGGAAGCAACGCGTGCCGGGATTATCGAGC TGCTGTTCCGCCGCGAATTTTTGTATAAGAAAGGGCGCTATATTCATTCCAGCGATACCGGCCGCGCGCTGATCCACTCG CTGCCGGACATCGCCGCCCGCCCGGATATGACCGCTGACTGGGAATCCACGCTGACGCGTATCAGTGAAAAGAGCTGCCG TTATCAGGATTTCATGCAACCGCTGGTCGCGACGTTGCAGAATCTCATCATGCAGGCCAAAACGAACCGGGTGTCTTCGG CATTCCGCAGTCTGCCTTCCAAACCGGCGGGCGCTGTGGCGAAAGGCAAAAGCGCCCCTAAACGCCGCAAAGCGAGTACC AAAGGGAAGGAAGCAAACAGTGATGAATAA Protein sequence : MRLFIAEKPSLARAIADVLPKPHRRGDGYIACGNDQVVTWCVGHLLEQAQPDAYDSRFARWSLADLPIIPEKWQLQPRSS VAKQLNVIKRLLLEASQVVHAGDPDREGQLLVDEVLDYLELTPEKRHATQRCLINDLNPQAVERAIERLRDNRDFIPLCV SALARARADWLYGINMTRAYTILGRNAGYNGVLSVGRVQTPVLGLVVRRDEDIENFVPKDFFEVKAHIVTPAEERFVALW QPSDSCEPYQDEEGRLLHRPLADHVVARIAGQPAMVTGYNDKRENDIAPLPFSLSTLQIEGSKAFGLSAQQILDICQKLY ETHKLITYPRSDCRYLPEEHFAGRHAVLNAIGVHRPDLMPQPAVDTDLRNRCWDDKKVDAHHAIIPTARSSNVNLTDDER KIYGLVARQYLMQFCPDAVYRKCVIDLDIAGGKFIAKARFLAEAGWRTLLGSKERDEENEGTPLPVVAKGDELLCERGEV VERQTQPPRPFTDATLLSAMTGIARFVQDKELKKILRATDGLGTEATRAGIIELLFRREFLYKKGRYIHSSDTGRALIHS LPDIAARPDMTADWESTLTRISEKSCRYQDFMQPLVATLQNLIMQAKTNRVSSAFRSLPSKPAGAVAKGKSAPKRRKAST KGKEANSDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 4e-108 | 41 |
