Gene Information

Name : Rahaq_1478 (Rahaq_1478)
Accession : YP_004212227.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Unknown
Product : capsid scaffolding
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1618856 - 1619707 bp
Length : 852 bp
Strand : +
Note : PFAM: capsid scaffolding; KEGG: yps:YPTB1858 V protein phage 186

DNA sequence :
ATGGCAACAAAAGCAAAGCGCTTTCGCATCTGTACCGAAGGGGCAACCACCGACGGGCGCGAAATCACCCGCGAGTGGAT
TGAACAGATGGCGGCGACCTATGACCCGAAGGTTTACGGCGCACGCATCAACATGGAGCACATCAAGGGCTATTTCCCTG
ACAGTGCGTTTCGTATGTACGGCGATGTCACCGGCGTTTACGCCGAAGAAGTGGCAGACGGCGCGCTGAAAGGCAAGCTG
GCACTGTATGCCGATATCGACCCGACGCCGGATTTAGTCTCAATGGTGAAAGCCCGCCAGAAGGTTTACACCTCCATCGA
AGTGAACCCCTCGTTTTCCGATACCGGCAAAGCCTATCTGATCGGCCTGGCGGTAACCGACAGCCCCGCCAGCCTCGGCA
CCGAATACCTGCAATTCAGCGCGAAGGCACAGCAAAACCCGCTGGCGAGCCGCAAACAGGATGCCGGAAACCTCTTTACC
GCCGCCGAAGAAACGGCGTTCGAGTTTGAGGAAGAGAAACCGGCCGCGCCGTCGCTGTTCTCCCGCGTGAAACAACTGCT
TTCCAGCAAATCCGCCTCAGATGATGCCCGTTTTAAAGATGTGCATGACGCCGTGGAAGTGGTGGTGGAACACGTCGAAA
CCGGCCTGAAAGCCACTGATGAAAAGCTGTCCGCGCTGGAGATTTCCGTGACAGAACGTCTGAACGCGCTGGAACAAACC
GTGAAAGATGACCGCGAACAGTTCAGCACGCTGAAAGGCAAGCTGGAGAAGTCCGCGCCGCAGAGCTACACGCAGCGCCC
CGTTTCCAGCGGTGGCGGCAAGGGTGATGCAGCCCATTTCACCGACTGCTAA

Protein sequence :
MATKAKRFRICTEGATTDGREITREWIEQMAATYDPKVYGARINMEHIKGYFPDSAFRMYGDVTGVYAEEVADGALKGKL
ALYADIDPTPDLVSMVKARQKVYTSIEVNPSFSDTGKAYLIGLAVTDSPASLGTEYLQFSAKAQQNPLASRKQDAGNLFT
AAEETAFEFEEEKPAAPSLFSRVKQLLSSKSASDDARFKDVHDAVEVVVEHVETGLKATDEKLSALEISVTERLNALEQT
VKDDREQFSTLKGKLEKSAPQSYTQRPVSSGGGKGDAAHFTDC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4626 NP_458708.1 putative capsid protein Not tested SPI-7 Protein 4e-59 53
t4320 NP_807915.1 capsid protein Not tested SPI-7 Protein 4e-59 53
unnamed ABR13465.1 putative capsid scaffold Not tested PAGI-6 Protein 6e-46 50