Gene Information

Name : Rahaq_1360 (Rahaq_1360)
Accession : YP_004212110.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 1484444 - 1486483 bp
Length : 2040 bp
Strand : +
Note : PFAM: Capsule polysaccharide biosynthesis protein; KEGG: ecc:c3690 KpsC protein

DNA sequence : 
ATGATTGGGATCTTTTCAGCGGGCATACAACGTATCCCGCATCTGGAAGCGTTTCTCGGCGAACCCTGTCGCAAGCTTTC
GCTGCTGCGACCGGTGCCGGATGGCATCACCCGCATCGCGGTGTGGGGTTACCGGCCAACCGGCGGGAAAGCCGTCGCGC
GGGCAGAACAGTCAGGCTTGCCGGTGCTGCGGCTGGAAGACGGGTTTATCCGCTCCCTGGGGCTGGGCGTGTCGGGCTGT
CCGCCGTTCTCAATGGTTTTAGAGACGCAGGGAATGTATTACGACGCCTCGAAACCCAGCACGCTTGAAATGCTGATCCG
CCAGCGTGAAGAGAATCAGCCGCTGCAGGATACGGCGCGGCAGGCCATGCAGATCATCGTGGAAGGTGATCTGTCGAAAT
ACAACCAGGCACCGGCCTGCACAAAGGCAAAACCCGAGTGTGGCGCGGTGCTGGTGGTCGATCAGACTTTCGGTGATATG
GCGGTGGTTTATGGCAATGCAGGCGCGGAGCAGTTCGAACAGATGTTGCAGGCCGCCATGGCAGAAAATCCGACGTCTGA
GATTTGGGTAAAGATCCACCCGGATGTTTTGCAGGGCAAAAAGGCCGGCTATTTCACGCAGATTACCGAACTGGCGCAGC
AGGATCCACGCATCAAACTGCTGGCTGAAAACGTCAGCCCGCAATCGCTGTTGCGCGTTGTCAGCCGGGTTTACGTGGTG
ACGTCTAACTACGGATTTGAAGCGCTGATCGCCGGAAAACCGGTCAGCGTGTTTGGTCAGCCGTGGTACGCAGGCTGGGG
ACTGACGGATGACCGTCATCCTCAGTCCGCATCGCTCCGGGCACGCCGGGGTACCGCCAGCGTGGAAGAGTTGTTCAGCG
CGGCCTGTTTGCGTTACAGCCGGTACATCAATCCGGCTAATGGCAAAAGCGGCACATTGTTTGATGTGCTCAGCTGGCTG
CTGATGCAGCGAAAGCATCAGCAACAGCGGGCGGGGCGCCTCTGGTCGCCGGGACTGACCCTCTGGAAGCGCAGCATTCT
CGGGCCTTTCCTGCGAACTAAAAGCAACAAAGTGAATTTCAGTAAACGCTATGCCGGTGAAGTGGCCTGTGTCGTGTGGG
GTATCAAAGGCGAGGCTCGCTGGGGTGCTCAGGCGCAGCAGCGTCAGATCCCGCAATGGCGAATGGAAGATGGTTTCCTG
CGTTCGGCCGGGCTGGGGTCTGATCTGCATCCGCCGCTGTCGCTGGTGCTGGATAAAACCGGTATCTATTACGATGCGAC
GCGCCCGAGCGATCTGGAACTGTTGCTGAGTCACAGCAATCTGGCGCCATGCCAGCAGCAGCGGGCTGCCACGTTACGCC
AGAGACTGGTTGCCAGCAAAGTCAGTAAATACAACCTGGGTGCGGCGTTTACCTTGCCCGCTGAAGCGACGAATAAAACG
GTGATTCTGGTGCCGGGGCAGGTTGAGGACGATGCCTCTATCCTGACCGGCACGATATCCCTGCGTACCAACAGCGCGCT
TTTACGCACTGTCCGGGAACGTAACCCCGGCGCTTACATTATTTATAAGCCTCATCCGGATGTTCTGGTGGGGAACCGGC
AGGGACACATTCCCGCCGAAGATGTCAGCCGCTGGGCGGACAGTCAGGCGCTGGATGCAGACATTATTCAATGTATTCAG
GCTGCCGACGAACTGCACACGCTGACGTCGCTGTCAGGTTTTGAAGCGTTGTTACACGGTAAAAAAGTGGTGTGTTACGG
CATGCCATTTTATGCCGGATGGGGACTGACGCAGGATGAGCATGCCTGTTCACGCCGGCTGCGCAGCCTCACCTTAGACG
ATGTGGTTTACCAGGCGCTGATTGCCTACCCGTCGTATATCAACCCGCAAAGTCGGGAGCCCATTTTGGCAGAGCAGGCG
GTTGAACTTCTTGCTGCGACGCCCCGGGCACAAATGCAATTCACCAGAGTTAAAGCGGGCAGGATAGTCCGGTATTACAG
AAAACTGCTCATGCTGGTCCGGGTGACGTTGACGACCTGA

Protein sequence : 
MIGIFSAGIQRIPHLEAFLGEPCRKLSLLRPVPDGITRIAVWGYRPTGGKAVARAEQSGLPVLRLEDGFIRSLGLGVSGC
PPFSMVLETQGMYYDASKPSTLEMLIRQREENQPLQDTARQAMQIIVEGDLSKYNQAPACTKAKPECGAVLVVDQTFGDM
AVVYGNAGAEQFEQMLQAAMAENPTSEIWVKIHPDVLQGKKAGYFTQITELAQQDPRIKLLAENVSPQSLLRVVSRVYVV
TSNYGFEALIAGKPVSVFGQPWYAGWGLTDDRHPQSASLRARRGTASVEELFSAACLRYSRYINPANGKSGTLFDVLSWL
LMQRKHQQQRAGRLWSPGLTLWKRSILGPFLRTKSNKVNFSKRYAGEVACVVWGIKGEARWGAQAQQRQIPQWRMEDGFL
RSAGLGSDLHPPLSLVLDKTGIYYDATRPSDLELLLSHSNLAPCQQQRAATLRQRLVASKVSKYNLGAAFTLPAEATNKT
VILVPGQVEDDASILTGTISLRTNSALLRTVRERNPGAYIIYKPHPDVLVGNRQGHIPAEDVSRWADSQALDADIIQCIQ
AADELHTLTSLSGFEALLHGKKVVCYGMPFYAGWGLTQDEHACSRRLRSLTLDDVVYQALIAYPSYINPQSREPILAEQA
VELLAATPRAQMQFTRVKAGRIVRYYRKLLMLVRVTLTT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 0.0 68
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 0.0 68
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 2e-136 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_1360 YP_004212110.1 capsular polysaccharide biosynthesis protein VFG0259 Protein 9e-137 48
Rahaq_1360 YP_004212110.1 capsular polysaccharide biosynthesis protein VFG0704 Protein 2e-113 46
Rahaq_1360 YP_004212110.1 capsular polysaccharide biosynthesis protein VFG0692 Protein 2e-129 46