Gene Information

Name : Rahaq_1301 (Rahaq_1301)
Accession : YP_004212051.1
Strain : Rahnella sp. Y9602
Genome accession: NC_015061
Putative virulence/resistance : Virulence
Product : AraC family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 1414671 - 1415057 bp
Length : 387 bp
Strand : -
Note : KEGG: spe:Spro_2833 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain

DNA sequence : 
ATGGCTCAAGACATTCATATCGCTATCGTCTGCGCACTCAGCAAATGGATTGAAGGCCATCTTGGTCGTGTGATCCATCT
TGAAGAACTGGCTGAGTATTCAGGCTATTCGCTCTGGCACATGCAAAAACTGTTCAAAGAATCGACAGGCATTTCTCTGG
GGAAGTACATCAGGGAACGCCGTCTGGCGAGTGCTGTTTATCAGCTGAGCAGCAGTGAAACCCCGATTTTTGACATTGCT
ATGGATTTCGGTTTTGGTTCGCAATCGCATTTCACCTACATGTTCCGCAAGCGTTTCAACATAACGCCACATGAATTCCG
CCAGAACCCTGACATCAAACTTGATGTCTCTCCCCCGCTGCATCTCATCCATCAGAAATCTGCCTGA

Protein sequence : 
MAQDIHIAIVCALSKWIEGHLGRVIHLEELAEYSGYSLWHMQKLFKESTGISLGKYIRERRLASAVYQLSSSETPIFDIA
MDFGFGSQSHFTYMFRKRFNITPHEFRQNPDIKLDVSPPLHLIHQKSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 6e-20 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_1301 YP_004212051.1 AraC family transcriptional regulator CP000647.1.gene1624. Protein 8e-18 45
Rahaq_1301 YP_004212051.1 AraC family transcriptional regulator NC_002695.1.914293.p Protein 2e-20 43
Rahaq_1301 YP_004212051.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 2e-20 43
Rahaq_1301 YP_004212051.1 AraC family transcriptional regulator CP000034.1.gene4505. Protein 4e-20 43
Rahaq_1301 YP_004212051.1 AraC family transcriptional regulator BAC0371 Protein 2e-20 43
Rahaq_1301 YP_004212051.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 1e-19 42
Rahaq_1301 YP_004212051.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rahaq_1301 YP_004212051.1 AraC family transcriptional regulator VFG0585 Protein 2e-20 43