Gene Information

Name : AciX9_3997 (AciX9_3997)
Accession : YP_004210111.1
Strain :
Genome accession: NC_015057
Putative virulence/resistance : Virulence
Product : type VI secretion ATPase, ClpV1 family
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 10797 - 13457 bp
Length : 2661 bp
Strand : -
Note : TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: sus:Acid_0239 ATPase; SMART: AAA ATPase

DNA sequence :
GTGAGTCTGAATCTGAAGTCCCTGATTGCGAAGTTGAACGATACGACCCGCAGCGTGCTCGAAGCGTCGGCTGGTTTGTG
CATGTCTCGCACGCACTATGACATCGAGATCGAGCACTACCTCGTGAAGGCGATGGAGAGCAGCGATAACGATATCGCGT
CGATCCTAAAGCATTACGGCGTGGATAAGTCGCGACTCTCGAAGGAGTTGGACCGGGCGCTGGACAATATCAAGACGGGC
AATGCGCGGTCCCCGGCGTTCAGCCCTCAGTTGGTGAAGATGTTGGCGGAGGCGTGGACTGTGGCGTCGATCGAGTACGA
TGCGGGCAGCGTACGTACGGGCTTTACGCTGCTGGCGCTACTAACCCACGAGGACCTTGCACGCGCCGTGAAAGAGATCA
GCCGCGAGCTACAGAAGATTGAACCAGAGGGGCTGCGTAAGGACTTCTATACGATCGTGGCGAACTCGCGCGAGGTACAG
GCGAGTCTGAAGCCAACGGGCGGAACGGGCGACGCGACGACCAGCGATGGGCCTGCGGCGGGCAAGGGTAAGACTCCGAA
TCTGGATCAGTACTGCGTGAATCTGACCGGTAACGCGAAGGCCGGAAAGATCGACCCGGTGCTGGGACGCGATGCTGAGG
TTCGTCAGATGATCGACATCCTGATGCGCCGCCGGCAGAACAATCCGATCCTGACCGGTGAGGCGGGTGTGGGTAAGACC
GCTGTCGTGGAAGGGCTGGCGAACCGGATCGTTCAAGGTGATGTGCCCCCGGCACTGCAGGGAGTTCACCTGTACAGCCT
CGACCTGGCGTTGTTGCAAGCCGGCGCGAGCGTGAAGGGTGAGTTCGAGCAGAGGCTCAAGGGACTGATCAACGAGGTGA
AGTCTTCGACCGAGAAGATCATCTTGTTTATCGACGAAGCGCATACGATGATCGGCGCGGGCGGTACGGCGGGACAGAAC
GATGCGGCCAACCTGTTGAAGCCGGCTCTCGCACGTGGCGAGTTGAGAACGATTGCTGCAACGACGTGGTCTGAGTACAA
AAAGTACTTTGAGAAAGATCCGGCTTTGGCGAGGCGCTTTCAGGTTGTGAAGGTCGAGGAGCCGAGCGAAGAGGTCTGCT
GCACGATGCTCCGTGGAATTGTTGCTTCGCTCGAGAAGCATCACGGACTGCGGATTCTGGATGAGGCGATTGTCGCGACG
GTCAAGCTCTCGCACCGGTACATTGCCGGTCGCCAGTTACCGGATAAGGCGGTCAGCGTTCTGGATACGGCTTGTGCACG
CCTGGCTCTCGGACAGAACTCAATGCCTCCTCAGTTGGAAGACGTTCTGCGGACGATCGACAGCCTTGAGGTGCAGAAGC
GGGTGCTGGAGCGTGAGAACGTGATCGGCGCTAGCCATGGCGAACGTGTGACCGAGATCGACGAGAAGATCGCCAAGAAC
AAGGCGACGCTTGAAGAGTTGAAGGAGCGCTGGGAGAAAGAGAAGGCTCTCGTTTCCGGCATTCGCACGATCCAGATCGA
GCTTGAGGCTGAACCGAAGAAGGACGAGGCAGCCGCGGCAGAGGCACGGAAGAAGCTGGGCGAGCTTGAAGCAGAGTTGC
TGGCACTGCAGGGTGAAACCGGACTGATGAGCGTTTCGGTCGACGCTCAGATCTGCGGTGCGGTGATCTCGGCCTGGACG
GGCATTCCGCTGGGCAAGATGATGAAGGACGAGATCTCGACTGTGCTGACGCTTGCCGAACACCTGAAGAAGCGTGTCAT
CGGACAGGACCATGCGCTGGCTGCAATCGCACAACGCATTCTCACCTCCAAGGCGAATATGGACGATCCGGTCAAACCGA
TTGGCGTCTTCATGCTGGTGGGACCGAGCGGCGTGGGCAAGACGGAGACGGCGATCGCGCTGGCCGACCTGCTCTACGGC
GGCGAGAAGAACATGATCACGATCAACATGTCGGAGTTCCAGGAAGCACATACGGTATCGACGCTGAAGGGTTCGCCTCC
GGGCTATGTGGGATACGGCGAGGGCGGTGTGCTGACCGAGGCTGTGCGTCGCCGTCCTTACTCCGTTGTGCTGCTGGATG
AGTGCGAGAAGGCTCATCCGGACGTGCTGGAGCTGTTCTTCCAAGTGTTCGATAAGGGCCGGATGGAGGATGGTGAGGGC
CGCGAGATAGATTTCCGGAACACAATCATCCTGCTGACGAGCAACGCAGCGACGGATACGTTGATGAAGCTGTGCGCCGA
TCCGGAGACGATGCCGTTCTCCGATGGACTGCTGGCGGCGATCAAGCCGGAGCTGAACAAGATCTTCAAGCCGGCGTTCC
TGGGCCGCATGATCACGGTGCCTTACTTCCCTGTTAGGGATGAAGCTCTGAAACAGATCATCCGGCTGAAGCTTGGCAAG
ATCCAGAAGCGGCTACGCGAGACGCACAAGGTCACGATGACGTATGACGATGCGTTACTGAACGAGGTGGCGTCGCGTTG
CACGGAGGTCGAAAGCGGTGCGCGAAACGTGGACAATATTCTGTCCAATACGATGCTGCCCGAGATCTCGCGGCAGATGC
TCGGGAAACTGGCGGAGGGCGAGACGATTGAGAGTGTCGCGATCTCCGTGGCGGACGGTAAGATGACGTACGATTGGCAG
GAAGTGGCAAAGGCAGCCTGA

Protein sequence :
MSLNLKSLIAKLNDTTRSVLEASAGLCMSRTHYDIEIEHYLVKAMESSDNDIASILKHYGVDKSRLSKELDRALDNIKTG
NARSPAFSPQLVKMLAEAWTVASIEYDAGSVRTGFTLLALLTHEDLARAVKEISRELQKIEPEGLRKDFYTIVANSREVQ
ASLKPTGGTGDATTSDGPAAGKGKTPNLDQYCVNLTGNAKAGKIDPVLGRDAEVRQMIDILMRRRQNNPILTGEAGVGKT
AVVEGLANRIVQGDVPPALQGVHLYSLDLALLQAGASVKGEFEQRLKGLINEVKSSTEKIILFIDEAHTMIGAGGTAGQN
DAANLLKPALARGELRTIAATTWSEYKKYFEKDPALARRFQVVKVEEPSEEVCCTMLRGIVASLEKHHGLRILDEAIVAT
VKLSHRYIAGRQLPDKAVSVLDTACARLALGQNSMPPQLEDVLRTIDSLEVQKRVLERENVIGASHGERVTEIDEKIAKN
KATLEELKERWEKEKALVSGIRTIQIELEAEPKKDEAAAAEARKKLGELEAELLALQGETGLMSVSVDAQICGAVISAWT
GIPLGKMMKDEISTVLTLAEHLKKRVIGQDHALAAIAQRILTSKANMDDPVKPIGVFMLVGPSGVGKTETAIALADLLYG
GEKNMITINMSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDECEKAHPDVLELFFQVFDKGRMEDGEG
REIDFRNTIILLTSNAATDTLMKLCADPETMPFSDGLLAAIKPELNKIFKPAFLGRMITVPYFPVRDEALKQIIRLKLGK
IQKRLRETHKVTMTYDDALLNEVASRCTEVESGARNVDNILSNTMLPEISRQMLGKLAEGETIESVAISVADGKMTYDWQ
EVAKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 3e-174 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AciX9_3997 YP_004210111.1 type VI secretion ATPase, ClpV1 family VFG2084 Protein 1e-157 45