Gene Information

Name : TSC_c08090 (TSC_c08090)
Accession : YP_004201984.1
Strain : Thermus scotoductus SA-01
Genome accession: NC_014974
Putative virulence/resistance : Virulence
Product : chaperone protein ClpB 1
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 755748 - 757976 bp
Length : 2229 bp
Strand : -
Note : -

DNA sequence :
ATGTGGGAAGAGGGGAGCATGAACAGGTACGACGATCGCGCCAGGCTGGTTTTCCACTACGCAAGGGAGGAGGGGAGCCG
CTTAGGCCACTCCATGATCGGCCCAGAGCACCTCCTCCTGGGCCTGATGCGCGAGGGGGGTACAGCGGCCCGCATCCTCC
AGGAGTACGGGGCAAGCCTCGAGGCCATGCGCCGCATGGTGGAGGAGCTGGTGGGCCGCGGCGAGGGGAGCCGCACCGGA
GAACCCCCTGCCATTACGCCCAGGGCCAGGCGGGTCATGGAGCTGGCCAGCGCCGAGGCCCGCAACATGGGGGCCCCGGT
GATCGGCACCGAGCACATCCTCCTGGGCATCATCCGAGAGGGTGACGGGATCGCCTACCGCATCCTCTCCCACTTCGCCA
AGGATGTGGACGCCATTCGCTGGCGTATCCTCTCCATGGCCGAGGGCCGGGAACGGGAAAAGCCGGTGAACACGCCCTTT
CTGGATGAGTATGGCCGCGACCTCACCAAGGAAGCCCGGGAGGGCAAGCTGGACCCCGTGATCGGCCGGCAGGAGGAGAT
CAACCGGGTGATCCAGATCCTGGCCCGCCGCACCAAGAACAACCCCGTGCTCATCGGGGACCCGGGAGTGGGCAAGACGG
CCATCGTGGAGGGCCTGGCCCAGGCCATCGTGGAAGGCCGGGTGCCCCCCATCCTCAAGGGTGCCCGGGTGGTGGCCATT
GACCTCGCCGGGGTGGTGGCGGGTACTAAGTACCGGGGGGAGTTTGAGGAGCGCCTGCGCCAGATCATTGAGGAGCTCAA
AAACGCCAAGGTCATCGCCTTCATTGACGAGCTTCACACCCTGATCGGGGCCGGGGGGGCCGAGGGTACCTTGGACGCCG
CCAACATCCTGAAGCCCGCCCTGGCCCGGGGGGAGATCCAGGTGATCGGGGCCACCACCACCGGGGAGTACCACCGCTAC
ATCGAGAAGGACGCCGCCCTGGAGCGGCGCTTCCAGCCGGTGATCGTCCTGGAGCCCTCCCCGGACGAAACCCTGGAGAT
CTTGAAGGGCCTCCGTCCCCGTTACGAGGCCCACCACGGGGTCATCATCCCCGACGAGATCCTGGAGCTTGCGGTCAAGA
TCGGGATCCGTTCCCTTCCCGGGCGCAACTTCCCCGACAAGGCCATCGACCTCATCGACGAGGCGGCGAGCCGGGTTCGC
CTGAACGCCTCCCTGGGCCTGCCCGTGGCCGAGGAGGAGGACGGGACCCCCGTGGTGACCCGGGAGGACATCGAGGCGGT
GGTGGACTCCTGGGGCGGGATCTACGTGGACGACAAGGACGACGAGAAGCTCATGCGCCTCGAGGAGGAGCTTAGAAAGC
GGGTGGTGGGCCAGGAGGAGGCCATCCGCGCTCTGGCCAGCGCCCTTAGGCGGGCCCGGGTGGGTCTGGGAGGCCGGACC
CGGGTGGCAGCCAGCTTCCTCTTCGTGGGCCAAAGCGGGGTGGGCAAGACCCAGCTGGCCAAGGCCCTGGCCGAGGTGCT
CTTCGGCTCCGAGCGGGCCCTCATCCGCTTTGACATGTCCGAGTTCCAGGAGCCCCACTCCGTTTCCAAGCTGATCGGGG
CCCCTCCCGGCTACGTGGGCTACGAGCAGGGGGGCCGGCTCACGGAGGCGGTGCGCCGCCAGCCCTTCAGCGTGGTCCTG
CTGGACGAGATTGAAAAGGCCCACCCGGACATCTACAACACCTTTCTCCAGGTCCTGGACGAGGGGCGCCTCACCGACGG
CATGGGGCGGACCGTGGACTTCCGCCGAGTCATCCTCATCATGACCTCCAACACCGGCTACAACGTGGGCCCGGCCATCG
GCTTCACCAGCAAGGAAGTGGACACGGAATCCCCCCTCAAGTCCCTCTTTACCCCCGAGTTCCTGGACCGGCTGGACGAG
GTGATCCGCTTCCGCCCCCTCACGGAGGAGGAGCTGGTGCAGGTGGCCCGGATGATGCTGGACGACATCCAGAAGGAGCT
GCAATCCCGGGACATCACCGTGCGCTTTGCCCCCGAGGTGGCCCGGTTCGTGGTGGAGCAGGCCCCCAAGACGGGGAGCG
CCCGGGCCATCCGGAGCATCATCCGGGAACGCATCGAAGATCCCCTCTCCCTGGCCCTCCTCAAAAAACCCACCGGCCAC
CTCTACGTGAACGTGGAGGACGGCCACCTGGCCTTCCACGAGGTGGAGGGGGAAGAGCTTTTGGTTTAG

Protein sequence :
MWEEGSMNRYDDRARLVFHYAREEGSRLGHSMIGPEHLLLGLMREGGTAARILQEYGASLEAMRRMVEELVGRGEGSRTG
EPPAITPRARRVMELASAEARNMGAPVIGTEHILLGIIREGDGIAYRILSHFAKDVDAIRWRILSMAEGREREKPVNTPF
LDEYGRDLTKEAREGKLDPVIGRQEEINRVIQILARRTKNNPVLIGDPGVGKTAIVEGLAQAIVEGRVPPILKGARVVAI
DLAGVVAGTKYRGEFEERLRQIIEELKNAKVIAFIDELHTLIGAGGAEGTLDAANILKPALARGEIQVIGATTTGEYHRY
IEKDAALERRFQPVIVLEPSPDETLEILKGLRPRYEAHHGVIIPDEILELAVKIGIRSLPGRNFPDKAIDLIDEAASRVR
LNASLGLPVAEEEDGTPVVTREDIEAVVDSWGGIYVDDKDDEKLMRLEEELRKRVVGQEEAIRALASALRRARVGLGGRT
RVAASFLFVGQSGVGKTQLAKALAEVLFGSERALIRFDMSEFQEPHSVSKLIGAPPGYVGYEQGGRLTEAVRRQPFSVVL
LDEIEKAHPDIYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYNVGPAIGFTSKEVDTESPLKSLFTPEFLDRLDE
VIRFRPLTEEELVQVARMMLDDIQKELQSRDITVRFAPEVARFVVEQAPKTGSARAIRSIIRERIEDPLSLALLKKPTGH
LYVNVEDGHLAFHEVEGEELLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 4e-133 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TSC_c08090 YP_004201984.1 chaperone protein ClpB 1 VFG0080 Protein 6e-118 50
TSC_c08090 YP_004201984.1 chaperone protein ClpB 1 VFG0079 Protein 4e-134 47